TCONS_00065437-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065437-protein
Unique NameTCONS_00065437-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065437-protein ID=TCONS_00065437-protein|Name=TCONS_00065437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=944bp
YXVAAHTSAGKTVVAEYAIALAQKHMRRAIYTSPIKALSNQKFRDFKGTF
PEVGLLTGDVQIKPESACLIMTTEILRSMLYNGSDVIRDVEWVIFDEIHY
INDADRGVVWEEVLIMLPSHVGIILLSATVPNTLEFAAWIGKTKQKEVYV
VQTKKRPVPLEHFLFTGNSNKTSNELFCILDRKGKFAVEGYRAALQAKKA
RASKSDESYGPKGTRQGNPKQDRNVWQSVVQMLKKKEQLPVVAFTLSKKK
CDSNADMVKNSDLITMTEQSHIITFFNKSVSKLKGSDRELPQVKWMEELL
RHGIGVHHSGILPILKEVVEMLFQKGLIKILFATETFAMGVNMPARTVVF
DSTRKFDGEKMRELLSSEYIQMAGRAGRRGLDTTGMVIMLCKGDVPETSV
LHAMMLGMPTKLESRFRLTYYMILNLLRVKQLTVQDMMKRSFAEYYQQKD
APENEKKLEELEKKVALLQDPDCQLCAIDLKNYYLTWAELLQRKKELKVK
IFGSSVAQKCLTSGRVVLVTNENYHNALGVILKAGTLDSTFSTSSSSKDP
LEKKYIVLLICDKVYELRCMNQEELGASNGSTTQDNLDNKEYTKRFLSTD
IYVPEDESGQIVEEITAVCIEEILDRSVTIDATKIIDNHKRRLIPRFRDN
PPSQSTIMATQELLNMAFDWRTTDQSPIIDPIRDMKITDIDFVDQSKRVN
VLQNKLNDFQCLQCKKINEHFNLMRANMQVRIDVSKLQLQLSDENLQLIK
EYEQRIMVLQKLDYIDKDKTLRHKGRVAFEISNHEVMITELLINNILTDL
HPAEIVSILSLFVFEQRRASKPTLTENLQTVFCQVKETATRVAECQRECG
LDTTVEEYVGGLHPGLMEVVYEWARGMPFKDVMNLTDVSEGNIVRCIQRL
DELCRDVRKASHVIGVQILCDKMEEGMSLIRRDIVFTASLYLAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041008XLOC_041008Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065437TCONS_00065437Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR012961Ski2_C
IPR025696rRNA_proc-arch_dom
IPR016438Ski2
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003724RNA helicase activity
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006401RNA catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006401 RNA catabolic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003724 RNA helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 3..163
e-value: 1.9E-15
score: 67.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..148
score: 21.462
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 294..380
e-value: 1.1E-17
score: 74.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 267..380
e-value: 2.0E-8
score: 34.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 228..427
score: 12.929
IPR012961ATP-dependent RNA helicase Ski2, C-terminalSMARTSM01142DSHCT_2coord: 766..942
e-value: 1.3E-76
score: 270.5
IPR012961ATP-dependent RNA helicase Ski2, C-terminalPFAMPF08148DSHCTcoord: 769..936
e-value: 1.4E-46
score: 158.0
IPR025696rRNA-processing arch domainPFAMPF13234rRNA_proc-archcoord: 436..742
e-value: 5.4E-30
score: 105.1
IPR016438ATP-dependent RNA helicase Ski2PIRSFPIRSF005198SKI2coord: 2..942
e-value: 0.0
score: 1179.6
NoneNo IPR availableGENE3D3.40.50.300coord: 1..154
e-value: 1.1E-24
score: 86.1
NoneNo IPR availableGENE3D3.40.50.300coord: 214..471
e-value: 7.4E-24
score: 83.7
NoneNo IPR availableCDDcd00079HELICccoord: 293..390
e-value: 1.34714E-13
score: 68.0332
NoneNo IPR availableCDDcd00046DEXDccoord: 3..129
e-value: 1.15806E-18
score: 83.1556
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 3..133
e-value: 2.5E-13
score: 50.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 300..393
coord: 207..260
coord: 3..133

Blast
[Close]
BLAST of TCONS_00065437-protein vs. Swiss-Prot (Human)
Match: SKIV2 (Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3)

HSP 1 Score: 948.347 bits (2450), Expect = 0.000e+0
Identity = 477/940 (50.74%), Postives = 645/940 (68.62%), Query Frame = 0 
Query:    3 VAAHTSAGKTVVAEYAIALAQKHMRRAIYTSPIKALSNQKFRDFKGTFPEVGLLTGDVQIKPESACLIMTTEILRSMLYNGSDVIRDVEWVIFDEIHYINDADRGVVWEEVLIMLPSHVGIILLSATVPNTLEFAAWIGKTKQKEVYVVQTKKRPVPLEHFLFTGNSNKTSNELFCILDRKGKFAVEGYRAALQAKKARASKSDESYGPK-GTRQGNPKQDRNVWQSVVQMLKKKEQLPVVAFTLSKKKCDSNADMVKNSDLITMTEQSHIITFFNKSVSKLKGSDRELPQVKWMEELLRHGIGVHHSGILPILKEVVEMLFQKGLIKILFATETFAMGVNMPARTVVFDSTRKFDGEKMRELLSSEYIQMAGRAGRRGLDTTGMVIMLCKGDVPETSVLHAMMLGMPTKLESRFRLTYYMILNLLRVKQLTVQDMMKRSFAEYYQQKDAPENEKKLEELEKKVALLQDPDCQLCAIDLKNYYLTWAELLQRKKELKVKIFGSSVAQKCLTSGRVVLVTNENYHNALGVILKAGTLDSTFSTSSSSKDPLEKKYIVLLICDKVYELRCMNQEELGASNGSTTQDNLDNKEYTKRFLSTDIYVPEDESGQIVEEITAVCIEEILDRSVTIDATKIIDNHKRRLIPRFRDNPPSQSTIMATQELLNMAFDWRTTDQSPIIDPIRDMKITDIDFVDQSKRVNVLQNKLNDFQCLQCKKINEHFNLMRANMQVRIDVSKLQLQLSDENLQLIKEYEQRIMVLQKLDYIDKDKTLRHKGRVAFEISNHEVMITELLINNILTDLHPAEIVSILSLFVFEQRRASKPTLTENLQTVFCQVKETATRVAECQRECGLDTTVEEYVGGLHPGLMEVVYEWARGMPFKDVMNLTDVSEGNIVRCIQRLDELCRDVRKASHVIGVQILCDKMEEGMSLIRRDIVFTASLY 941
            VAAHTSAGKTVVAEYAIALAQKHM R IYTSPIKALSNQKFRDF+ TF +VGLLTGDVQ+ PE++CLIMTTEILRSMLY+GSDVIRD+EWVIFDE+HYIND +RGVVWEEVLIMLP HV IILLSATVPN LEFA WIG+ K++++YV+ T  RPVPLEH+LFTGNS+KT  ELF +LD +G F  +GY AA++AKK R SK  +++G K  T QG P QDR V+ S++  L+ + QLPVV FT S+ +CD  A  + + DL T +E+S I  F  + +++L+GSDR+LPQV  M ELL  G+GVHHSGILPILKE+VEMLF +GL+K+LFATETFAMGVNMPARTVVFDS RK DG   R+LL  EY+QMAGRAGRRGLD TG VI+LCKG VPE + LH MM+G P++L+S+FRLTY MILNLLRV  L V+DMMKRSF+E+  +KD+  +E+ L EL K++  L++PD     +DL  YY    EL + +  ++ +I  S    K L++GRVV+V N+ +HNALGVIL+     S+ STS        + +  L++CDK       + ++ G +             Y    +   +++PE      V ++    +  I  + + ++  KI+++  +R  P+F+ +PP  +   A QELL +A         P +DP+ D+++ D+  V+   R   L+  +   QC+   +    +  +R  MQ++ ++ +L+  LSD++L L+ EY QR+ VL+ L Y+D+  T++  GRVA  +S+HE+++TEL+ +N L+ L P EI ++LS  V +    +   L   L+    +V+  A R+ E Q  CGL+ TVEE+VG L+ GL+EVVYEWARGMPF ++  L+   EG +VRCIQRL E+CR +R A+ ++G  +L  KME   +L+RRDIVF ASLY
Sbjct:  330 VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETQHMIQRRIMESVNGLKSLSAGRVVVVKNQEHHNALGVILQV----SSNSTS--------RVFTTLVLCDKPL---SQDPQDRGPATAEVP--------YPDDLVGFKLFLPEGPCDHTVVKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPLAAVTTAVQELLRLA--QAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
The following BLAST results are available for this feature:
BLAST of TCONS_00065437-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKIV20.000e+050.74Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3[more]
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