TCONS_00065301-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065301-protein
Unique NameTCONS_00065301-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065301-protein ID=TCONS_00065301-protein|Name=TCONS_00065301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp
MDLFRIERFGAECLDEEDVKAKEMHLHKLIEQRRKKRKSNISEEDETKTL
KKKKKKKLADDTEECKQEIVVKEKKLKKKKKKQSDDEEDESEVEKQKLEK
KKKSKTKVDKSIENALENSEDESSILREDSTDKRSKKKENSLEGVEIEEI
NEQIEEENEEKHNNDDLQQEPEKEHSFPILGKQVHRSKGPVKRNLPRWLA
EPKIISSRTDTHNEHKIEELDFLSCNTIKNLERMGVKHLFPVQSHVVPTV
MDMFKNKKPCFPCRDICVQSPTGSGKTLSYVMPVIEAMSKNIIRDLQCLV
VLPTKDLAAQVKVTFDQCVVGTNLKVGLVAGVKSFAKEQESIITARPTGF
HTLIDILVCSPGRLVDHLKLTPGFSLAHLKYMVIDEADRLLSDSYANWLA
LSMKSVQADSSHKIFPLTPAKFSKPFQHVQKFLFSATLTENPEKIATLEL
FNPILFLSQSSRKKKDDDQDVEGEEQPPEDQEVNLKTYVVPDQLKERMMV
VEAHQKPLALLYLMKNEDHQCALCFTNSIESTHRLFLLLQRFKDIKVAEF
SSKLNETQRKGILRDFRQQKVNLLIATDSMSRGMDIRNVDLVVNYDAPNN
AKTYVHRVGRTARGGEEGEAVTILQGKEVFHFKKMHQSLDTARPIKKIRI
NEQAFEEFEDDYELALRDLKTKVQSEKKKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040938XLOC_040938Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065301TCONS_00065301Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 659..679
NoneNo IPR availableCOILSCoilCoilcoord: 62..101
NoneNo IPR availableCOILSCoilCoilcoord: 140..170
NoneNo IPR availableGENE3D3.40.50.300coord: 492..680
e-value: 1.3E-38
score: 132.3
NoneNo IPR availableGENE3D3.40.50.300coord: 14..476
e-value: 4.5E-39
score: 133.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 461..483
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..193
NoneNo IPR availableCDDcd00079HELICccoord: 505..623
e-value: 5.84798E-27
score: 105.783
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 533..615
e-value: 3.9E-24
score: 96.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 506..615
e-value: 1.7E-26
score: 92.6
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 493..656
score: 18.048
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 235..472
e-value: 1.7E-35
score: 133.9
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 257..456
score: 20.952
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 241..445
e-value: 3.3E-32
score: 111.6
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 383..391
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 492..636
coord: 295..454

Blast
[Close]
BLAST of TCONS_00065301-protein vs. Swiss-Prot (Human)
Match: DDX51 (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 348.591 bits (893), Expect = 9.134e-111
Identity = 201/515 (39.03%), Postives = 293/515 (56.89%), Query Frame = 0 
Query:  179 ILGKQVHRSKGPVKRNLPRWLAEPKIISSRTDTHNEHKIEELDFLSCNTIKNLERMGVKHLFPVQSHVVPTVMDM----FKNKKPCFPCRDICVQSPTGSGKTLSYVMPVIEAMSKNIIRDLQCLVVLPTKDLAAQVKVTFDQCVVGTNLKVGLVAGVKSFAKEQESIITARPTGFHTLIDILVCSPGRLVDHLKLTPGFSLAHLKYMVIDEADRLLSDSYANWL----ALSMKSVQADSSHKIF------PLTPAKFSKPFQHVQKFLFSATLTENPEKIATLELFNPILFLSQSSRKKKDDDQDVEGEEQPPEDQEVNLKTYVVPDQLKERMMVVEAHQKPLALLYLMKNEDHQCALCFTNSIESTHRLFLLLQRFKDIKVAEFSSKLNETQRKGILRDFRQQKVNLLIATDSMSRGMDIRNVDLVVNYDAPNNAKTYVHRVGRTARGGEEGEAVTILQGKEVFHFKKMHQSLDTARPIKKIRINEQAFEEFEDDYELALRDLKTKVQSEKKK 679
            +LG    R    V+  LPRWLAEP  +  R  T +   IE++  +  +  K L   G+   FPVQ+ V+P +++     F   +  +   D+CV +PTGSGKTL++V+PV++A+   ++  ++ LVVLPTK+LA QV   F+     T L+V LV G KS AKEQES++     G+  L DI+V +PGRLVDH+  TPGFSL  L++++IDEADR++   + +WL    A + +S        +        +T A    P   +QK LFSATLT+NPEK+  L L  P LF S     +  +D D +G+             Y  P  L    +      KPL +L+L+        LCFTNS E++HRLFLL+Q F  + VAEFSS+    QR+ IL+ F Q K+ LLI+TD+ +RG+D++ V+LVVNYDAP   +TYVHRVGRTAR G+ G+A T+L   +   F +M      A  +++  ++ +  +     YE AL  L+  V+ E+K+
Sbjct:  162 VLGGFGKRKAPKVQPFLPRWLAEPNCVR-RNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAFQSEDPADPCALLQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLF-STGLAHRGLEDTDGDGDS----------GKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGVDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRMLTEAG-APELQRHELSSKLLQPLVPRYEEALSQLEESVKEERKQ 663
The following BLAST results are available for this feature:
BLAST of TCONS_00065301-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX519.134e-11139.03ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
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