TCONS_00065007-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065007-protein
Unique NameTCONS_00065007-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065007-protein ID=TCONS_00065007-protein|Name=TCONS_00065007-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MPKYFCDYCDTYLTHDSPSVRKTHNNGRKHKDNVKFYYAKWMEDQAQALI
DQTIKQAEKSTKNLPPGMNMPPGMMPGMMPPPGMPGMPGMPGMPPMPFAG
MPPMPPGMMPPMPPGMRPPGPGGPMNGPPGPGGPPGASNPNKRPGGPMSG
GPPAQRPNGPGGPGGPPNRPNMRGGPGPNMRGPRPNMGPGPLMGINARPP
QGGPPNRPHFRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040757XLOC_040757Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065007TCONS_00065007Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR017340U1_snRNP-C
IPR013085U1-CZ_Znf_C2H2
IPR000690Matrin/U1-C_Znf_C2H2
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005685U1 snRNP
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0005634 nucleus
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 6.0E-12
score: 55.7
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..182
e-value: 7.9E-32
score: 109.8
coord: 123..212
e-value: 1400.0
score: -1.8
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..183
score: 12.944
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 5.8E-22
score: 77.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..212
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.893
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..56

Blast
[Close]
BLAST of TCONS_00065007-protein vs. Swiss-Prot (Human)
Match: RU1C (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.179e-29
Identity = 43/53 (81.13%), Postives = 50/53 (94.34%), Query Frame = 0 
Query:    1 MPKYFCDYCDTYLTHDSPSVRKTHNNGRKHKDNVKFYYAKWMEDQAQALIDQT 53
            MPK++CDYCDTYLTHDSPSVRKTH +GRKHK+NVK YY KWME+QAQ+LID+T
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT 53
The following BLAST results are available for this feature:
BLAST of TCONS_00065007-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU1C1.179e-2981.13U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
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