TCONS_00064852-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064852-protein
Unique NameTCONS_00064852-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064852-protein ID=TCONS_00064852-protein|Name=TCONS_00064852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MASNKFEALAREDSNDSSSKSDEGEENGEIGSDDSGSKEDHNKFVFPDEP
FVEKGEHKLQYCYCLWFSRKNPGKQQLTQQKYEDSIKLIGAFSSVEQFWA
YYSFMVRPGELTGHSDIHLFKHGIRPMWEDKANKNGGKWIVRLKKGLASR
CWENLILAMLGEQFMVGPEVCGAVVSLRYQEDIISIWNRNASDQATTTRI
RDTLRRVLNLPQNTIMEYKAHMASLTDHSSYRNTNVFIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040677XLOC_040677Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064852TCONS_00064852Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023398TIF_eIF4e-like
IPR001040TIF_eIF_4E
IPR019770TIF_eIF_4E_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023398Translation Initiation factor eIF- 4e-likeGENE3D3.30.760.10coord: 29..234
e-value: 1.1E-70
score: 236.7
IPR023398Translation Initiation factor eIF- 4e-likeSUPERFAMILY55418eIF4e-likecoord: 36..233
IPR001040Translation Initiation factor eIF- 4ePFAMPF01652IF4Ecoord: 59..218
e-value: 3.6E-56
score: 189.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
IPR019770Eukaryotic translation initiation factor 4E (eIF-4E), conserved sitePROSITEPS00813IF4Ecoord: 116..139

Blast
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BLAST of TCONS_00064852-protein vs. Swiss-Prot (Human)
Match: IF4E2 (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.001e-101
Identity = 147/229 (64.19%), Postives = 171/229 (74.67%), Query Frame = 0 
Query:    3 SNKFEALAREDSND------SSSKSDEGEENGEIGSDDSGSKEDHNKFVFPDEPFVEKGEHKLQYCYCLWFSRKNPGKQQLTQQKYEDSIKLIGAFSSVEQFWAYYSFMVRPGELTGHSDIHLFKHGIRPMWEDKANKNGGKWIVRLKKGLASRCWENLILAMLGEQFMVGPEVCGAVVSLRYQEDIISIWNRNASDQATTTRIRDTLRRVLNLPQNTIMEYKAHMASL 225
            +NKF+AL  +DS D      +S++ D  +E  E   + S SK    K V P        EH LQY Y  W+SR+ PG+   + Q YE +IK IG F+SVEQFW +YS MVRPG+LTGHSD HLFK GI+PMWED ANKNGGKWI+RL+KGLASRCWENLILAMLGEQFMVG E+CGAVVS+R+QEDIISIWN+ ASDQATT RIRDTLRRVLNLP NTIMEYK H  S+
Sbjct:    2 NNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQSSSKR---KAVVPG-----PAEHPLQYNYTFWYSRRTPGRP-TSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSI 221
The following BLAST results are available for this feature:
BLAST of TCONS_00064852-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF4E21.001e-10164.19Eukaryotic translation initiation factor 4E type 2... [more]
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