TCONS_00064762-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064762-protein
Unique NameTCONS_00064762-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064762-protein ID=TCONS_00064762-protein|Name=TCONS_00064762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
LDTIQKISDLKNNTMAGNNHPYFMKVAKNFNQNKRKNATPDDGGNAQNHQ
DHKKRFLQTPPGYEQKAVLDQKRQELMREVRQLPIFFGKGALIQEVARNE
TVIVMSETGSGKTTQLPQYILNQYSNRGIVCCTQPRRVAAISVASRVSKE
VGCPLGDVVGYTVRFEDVTSPQTKLKYMTDGMLLREALVDPLLKRYSVVI
LDEAHERSIQTDVLFGVVKKAQQERRKQNGLKPLKIIIMSATLQAEEFER
YFSGAKICFLEGRRHPIKIKYTEEIQKDYAHATLVTAMQLHREKPPGQDI
LVFLTGQEEILSLAKTMKEIAEHVKDDFSNFQVCPLFASLPHREQMRVFT
PSPDGVRKIILSTNIAETSVTIPNVKYVVDCGMVKAKDYNPTTGMETLKV
KPVSKAQARQRCGRAGRECPGICYRLYPEDSFRYLDENTVPEIKRCNLRS
VVLNLLAMGLRDVISFDFMSPPSEDSLKDALRQLVQLSAVESIESQQVST
HP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040613XLOC_040613Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064762TCONS_00064762Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 318..419
e-value: 4.2E-18
score: 76.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 292..417
e-value: 5.5E-15
score: 55.6
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 283..459
score: 15.976
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 73..270
e-value: 3.9E-28
score: 109.5
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 93..261
score: 21.518
NoneNo IPR availableGENE3D3.40.50.300coord: 82..246
e-value: 1.4E-28
score: 99.2
NoneNo IPR availableGENE3D3.40.50.300coord: 264..440
e-value: 1.0E-52
score: 177.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..61
NoneNo IPR availableCDDcd00046DEXDccoord: 102..243
e-value: 8.33301E-29
score: 109.734
NoneNo IPR availableCDDcd00079HELICccoord: 266..426
e-value: 3.31485E-11
score: 59.5589
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 93..248
e-value: 1.6E-8
score: 34.4
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 197..206
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 93..493

Blast
[Close]
BLAST of TCONS_00064762-protein vs. Swiss-Prot (Human)
Match: DHX33 (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=2)

HSP 1 Score: 494.582 bits (1272), Expect = 2.475e-169
Identity = 250/440 (56.82%), Postives = 325/440 (73.86%), Query Frame = 0 
Query:   58 QTPPGYEQKAVLDQKRQELMREVRQLPIFFGKGALIQEVARNETVIVMSETGSGKTTQLPQYIL-NQYSNRGIVCCTQPRRVAAISVASRVSKEVGCPLGDVVGYTVRFEDVTSPQTKLKYMTDGMLLREALVDPLLKRYSVVILDEAHERSIQTDVLFGVVKKAQQERRKQNGLKPLKIIIMSATLQAEEFERYFSGAKICFLEGRRHPIKIKYTEEIQKDYAHATLVTAMQLHREKPPGQDILVFLTGQEEILSLAKTMKEIAEHVKDDFSNFQVCPLFASLPHREQMRVFTPSPDGVRKIILSTNIAETSVTIPNVKYVVDCGMVKAKDYNPTTGMETLKVKPVSKAQARQRCGRAGRECPGICYRLYPEDSFRYLDENTVPEIKRCNLRSVVLNLLAMGLRDVISFDFMSPPSEDSLKDALRQLVQLSAVESIESQ 496
            Q PP  +  A    +  EL R  R LPIF  +G L+ ++   +  +++ ETGSGKTTQ+PQY+     S +GI+  TQPRRVAAIS+A+RVS E    LG +VGYTVRF+DVTS  T++K++TDGMLLREA+ D LL++YS VILDEAHER+I TDVLFGVVK AQ+ RRK+ G  PLK+I+MSAT+  + F +YF+GA + +LEGR+HPI++ YT++ Q DY HA LV+  Q+H+E P  QDILVFLTGQEEI +++KT ++IA+H+ D      V PL+ASLP+ +Q+RVF  +P G RK+I+STNIAETS+TI  +KYVVD GMVKAK YNP +G+E L V+ VSK QA QR GRAGRE  GICYRLY ED F   D+ TVPEI+RCNL SV+L LLAM + +V++FDFMS PS D ++ A+ QL  L A+E  + Q
Sbjct:   51 QQPPLAQPSASPYPEAVELQR--RSLPIFQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTRIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQK-RRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLEGRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQ 487
The following BLAST results are available for this feature:
BLAST of TCONS_00064762-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX332.475e-16956.82Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
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