TCONS_00064382-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064382-protein
Unique Name	TCONS_00064382-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	164

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064382-protein ID=TCONS_00064382-protein|Name=TCONS_00064382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MADIDIIEDASPSQGSSSSSFSYKTPDPIKICGVGHLTMFGMTNKFDTDF
PSGLTGKLAPEEFESTLVRINKVLGRSLPMNLRWLLCGCICCCCTMGMSM
WPVLFLSKRTRHTLEKIIDHENQTLYHKLSLHLKLQKQMITSSNMMEYIL
LMEFRPKQPIYKPD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040367	XLOC_040367	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064382	TCONS_00064382	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019383	Golgin_A_7/ERF4

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019383	Golgin subfamily A member 7/ERF4	PFAM	PF10256	Erf4	coord: 43..132 e-value: 2.9E-11 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Blast

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BLAST of TCONS_00064382-protein vs. Swiss-Prot (Human)
Match: CHIC2 (Cysteine-rich hydrophobic domain-containing protein 2 OS=Homo sapiens GN=CHIC2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.589e-52
Identity = 81/140 (57.86%), Postives = 118/140 (84.29%), Query Frame = 0

Query:   25 TPDPIKICGVGHLTMFGMTNKFDTDFPSGLTGKLAPEEFESTLVRINKVLGRSLPMNLRWLLCGCICCCCTMGMSMWPVLFLSKRTRHTLEKIIDHENQTLYHKLSLHLKLQKQMITSSNMMEYILLMEFRPKQPIYKPD 164
            +PDP+ + G GH+T+FG++NKF+++FPS LTGK+APEEF++++ R+N  L ++LP+N+RWLLCGC+CCCCT+G SMWPV+ LSKRTR ++EK+++ EN  LYHKL LH +L K+   ++NMMEY++L+EF PK PI++PD
Sbjct:   26 SPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMMEYVILIEFLPKTPIFRPD 165

The following BLAST results are available for this feature:

BLAST of TCONS_00064382-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064382-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIC2	4.589e-52	57.86	Cysteine-rich hydrophobic domain-containing protei...	[more]

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TCONS_00064382-protein (polypeptide) - C. hemisphaerica