TCONS_00064227-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064227-protein
Unique NameTCONS_00064227-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064227-protein ID=TCONS_00064227-protein|Name=TCONS_00064227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1080bp
TPTIFFQSRRCGPTGSKLQHYYTKMRETTFTLLLALWNVVYSFNIDLDNS
KVYEFKLQTNESLFGYSLALRNTQGKELMVGAPLETQNAQRSGSVYSCGL
NTKQCQMLKDYKDSTPSNQDQRKHNMMGVTLAASGDTIMAGAPRWWIKRS
PAIYYRGRVAVLKSDDTVDYETVPCEDEGYSNYAFGYCEAGMSSSSMTYN
NLPLFVVGAPGSVNFKGALFTVYRRGSIRVSRTKEDRLEANSYMGYAVTT
GKFTDPSQSGYVTDIAGGAPRGSVMAGKVIIYNVKNSYRITEEMVIQSPD
DQVGTYFGAAVCAVDLDNDGKDDLVVGAPQFAKIMDEGRVYVYLNRKGSR
FTGFDQTSVLEGDNQQGARFGSAIANIGDINKDGFQDIAIGAPYGGVDGK
GMVYIYNGGQNGLRVNQPQRIAASDVSNTPPQGFGISLAGGVDIDNNKYP
DLAVGAFRDAKAYVLRTKPVIKLTTKLSTSADAVPSRKSDKFSCGGLQQL
DSYNCLDLEVQLSYTGEGVADSITVEATIDFDKNGLPKRAKTPTGLKSLV
VQNITLTKDIAKTETIKVAVLISVDTDVVSPIEFTAKYKVHIDQSKCTNT
PCAILDAFGESNADTHEITYLRECKSESTCLPQLEMTTSLDLPRNKDLDP
KQVQYGVVYQVDMLADIVNLGEAAYQSVMKLNFSSDLQVIGVEVNKASIN
QRKIVSLNAALMQLQFPLANPISPNETVSVLAKFSVSKSRPTQREYTFTA
EATAFGDMVGKKNKGEEKIDVNIETCVGVSASARPQNFQYLLNLAKPPPP
SSNTTLRNESVKVDVIGNAVTYSFIVQNRGNLPVENLKAKMNTAVQIEGL
DLIYVVYVEVDGAPCKTDFNNLNYVTKYQQTDGDGNPTNPGGNTNNNRRR
RRNTDDDPEQQDDDDGNAAKEKEIITCFRQGSCKKYTCDIERIEPNKGAI
IKMYARFWDYNLGKPEVQDFKGVKSEVEVEFVGSDKDYYIQRNDEKCQFL
TDTTVFMSPELENKKAPPVPWWVLLLSVAGALLLLAIAIAILYKVGFFKR
NRKIKEITGPTETGHDATNPSTDDDYDDDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040262XLOC_040262Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064227TCONS_00064227Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 264..275
score: 34.76
coord: 241..253
score: 47.28
coord: 1031..1050
score: 56.34
coord: 300..320
score: 47.27
coord: 434..455
score: 57.76
coord: 461..480
score: 30.61
coord: 577..590
score: 30.84
coord: 369..393
score: 64.0
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 303..358
e-value: 1.4E-13
score: 61.1
coord: 366..422
e-value: 1.9E-14
score: 64.0
coord: 181..234
e-value: 180.0
score: 0.8
coord: 60..109
e-value: 1.2
score: 18.2
coord: 430..477
e-value: 3.1E-4
score: 30.1
coord: 240..295
e-value: 5.0
score: 15.0
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 230..291
score: 7.958
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 419..482
score: 11.523
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 113..171
score: 7.083
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 293..352
score: 13.022
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 356..415
score: 12.868
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 50..107
score: 9.942
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 172..229
score: 5.723
NoneNo IPR availableGENE3D2.60.40.1510coord: 631..774
e-value: 5.1E-11
score: 42.4
NoneNo IPR availableGENE3D2.60.40.1460coord: 471..630
e-value: 1.8E-12
score: 47.5
NoneNo IPR availableGENE3D1.20.5.930coord: 1016..1052
e-value: 4.8E-14
score: 51.3
NoneNo IPR availableGENE3D2.60.40.1530coord: 792..1015
e-value: 4.1E-13
score: 48.8
NoneNo IPR availableGENE3D2.130.10.130coord: 43..470
e-value: 1.1E-93
score: 313.9
NoneNo IPR availablePFAMPF13517VCBScoord: 315..389
e-value: 4.3E-10
score: 39.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 878..919
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1059..1080
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 75..469
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 467..938
e-value: 1.4E-32
score: 113.1
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 1043..1050
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 777..1023
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 629..754

Blast
[Close]
BLAST of TCONS_00064227-protein vs. Swiss-Prot (Human)
Match: ITA4 (Integrin alpha-4 OS=Homo sapiens GN=ITGA4 PE=1 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 1.333e-70
Identity = 214/730 (29.32%), Postives = 362/730 (49.59%), Query Frame = 0 
Query:   25 MRETTFTLLLALWNVVYSFNIDLDNSKVYEFKLQTNESLFGYSLALR-NTQGKELMVGAPLETQNAQRS----GSVYSCGLNTKQCQMLKDYKDSTPSNQ-------DQRKHNMMGVTLA---ASGDTIMAGAPRW----WIKRSPAIYYRGRVAV---LKSDDTVDYETVPCEDEGYSNYA--FGYCEAGMSSSSMTYNNLPLFVVGAPGSVNFKGALFTVYR--RGSIRVSRTKEDRLEANSYMGYAVTTGKFTDPSQSGYVTDIAGGAPRGSVMAGKVIIYNV-KNSYRITEEMVIQSPDDQVGTYFGAAVCAVDLDNDGKDDLVVGAPQFAKIMDEGRVYVYLNRKGSRFTGFDQTSVLEGDNQQGARFGSAIANIGDINKDGFQDIAIGAPYGGVDGKGMVYIYNGGQNGLRVNQPQRIAASDVSNTPPQGFGISLAGGVDIDNNKYPDLAVGAFRDAKAYVLRTKPVIKLTTKLSTSADAVPSRKSDKFSCGGLQQLDSYNCLDLEVQLSYTGEGVADSITVEATIDFDKNGLPKRAKTP-------TGLKSLVVQNITLTKDIAKTETIKVAVLISVDTDVVSPIEFTAKYKV--HIDQSKCTNT--PCA-ILDAFGESNADTHEITYLRECKSESTCLPQLEMTTSLDLPRNKDLDPKQVQYGVVYQVDMLADIVNLGEAAYQSVMKLNFSSDLQVIGV-EVNKASINQRKIVSLNAALMQL 714
            +RET   LL         +N+D +++ +Y+     + +LFGYS+ L  +   + L+VGAP     A  S    G++Y C +     Q  +  +  +P+ +       ++R +  +GVTL+       +I+    RW    +IK    +   G   V   L+++  +     PC  +    +   F  C+AG+SS    +    L V+GAPGS  + G+LF VY       +    K+++++  SY+GY+V  G F    +S + T++ GGAP+   + GK  I+++ +    I  EM       ++G+YFGA+VCAVDL+ DG  DL+VGAP  + I +EGRV+VY+N          +T+++ G ++  ARFG +I N+GDI+ DGF+D+AIGAP    D +G +YIYNG  +G+     QRI    +S +    FG S++G +D DNN Y D+AVGAFR   A +LRT+PV+ +   LS       S    KF C  ++      C+DL +  SY G+ V   I +   +  D N   ++A++P        G   ++  +I ++   A   T +  +   V  D+++PI+  A Y +  H+   + T    P   IL    E +     I + R C  E+ C   L+++  +   +  + +   +  G +  + +   + N G+ AY++ + +     L  I + E+ +  IN    V+ N+ ++QL
Sbjct:   16 VRETVMLLLCLGVPTGRPYNVDTESALLYQ---GPHNTLFGYSVVLHSHGANRWLLVGAPTANWLANASVINPGAIYRCRIGKNPGQTCEQLQLGSPNGEPCGKTCLEERDNQWLGVTLSRQPGENGSIVTCGHRWKNIFYIKNENKLPTGGCYGVPPDLRTE--LSKRIAPCYQDYVKKFGENFASCQAGISS----FYTKDLIVMGAPGSSYWTGSLF-VYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHF----RSQHTTEVVGGAPQHEQI-GKAYIFSIDEKELNILHEM----KGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLV-GSDKYAARFGESIVNLGDIDNDGFEDVAIGAPQED-DLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSM-FGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPVVIVDASLSHPE----SVNRTKFDC--VENGWPSVCIDLTLCFSYKGKEVPGYIVLFYNMSLDVN---RKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDV-RDILTPIQIEAAYHLGPHVISKRSTEEFPPLQPILQQKKEKDIMKKTINFARFCAHEN-CSADLQVSAKIGFLKPHE-NKTYLAVGSMKTLMLNVSLFNAGDDAYETTLHVKLPVGLYFIKILELEEKQINCE--VTDNSGVVQL 709
The following BLAST results are available for this feature:
BLAST of TCONS_00064227-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITA41.333e-7029.32Integrin alpha-4 OS=Homo sapiens GN=ITGA4 PE=1 SV=... [more]
back to top