TCONS_00064167-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064167-protein
Unique Name	TCONS_00064167-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	548

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064167-protein ID=TCONS_00064167-protein|Name=TCONS_00064167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MKTAIIVLLGVIACASAAFRTCDRKMFAKVGCYARNKALLPDMILNGREV
TAKYLPEDGLISWEDYNSYIHSLACECAEKAKEQGYKYFGIGFYGECFAG
KNVGLAGVLAKTQISDLCIRGDYTACEKVEDGSHECVGGANAEYIYTIQE
QAAQAEQRINGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCE
ALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPE
PSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRE
RSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCG
YGIETRMRTCTNPAPQHNGKGCEGSTKDTRACYKKACPVNGKWSAWSSYT
SCSKSCKGGQKSRTRSCTNPAPAHNGRSCSGSTKETVDCNQKVRCPYYTA
YHINHVCEGGNMRMWCTDKHQVIKLSEYWYGRTNTNTCKKGINWFWHWKT
ACKGGSNKVHASCQNKNSCTVYANNSWMGGDPCKGTPKYYYVKFRCYG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040234	XLOC_040234	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064167	TCONS_00064167	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt
IPR000922	Lectin_gal-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030246	carbohydrate binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 391..404 score: 42.73 coord: 409..420 score: 45.01 coord: 428..439 score: 35.79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..432
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 279..331 e-value: 1.1E-11 score: 54.8 coord: 393..446 e-value: 1.9E-10 score: 50.7 coord: 163..217 e-value: 3.0E-13 score: 60.0 coord: 336..388 e-value: 9.9E-11 score: 51.7 coord: 222..274 e-value: 5.6E-14 score: 62.4
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 332..387 e-value: 2.6E-16 score: 59.2 coord: 159..216 e-value: 1.8E-13 score: 50.1 coord: 218..273 e-value: 5.9E-18 score: 64.4 coord: 275..330 e-value: 1.9E-15 score: 56.4 coord: 389..445 e-value: 3.1E-13 score: 49.3
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 165..216 e-value: 1.2E-9 score: 38.1 coord: 337..387 e-value: 5.3E-9 score: 36.1 coord: 223..273 e-value: 6.7E-13 score: 48.5 coord: 280..330 e-value: 5.4E-11 score: 42.4 coord: 394..445 e-value: 1.6E-6 score: 28.1
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 390..446 score: 12.883
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 219..274 score: 14.162
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 276..331 score: 13.193
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 333..388 score: 12.802
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 160..217 score: 12.17
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 332..383
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 159..216
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 216..273
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 389..440
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 272..330
IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	PFAM	PF02140	Gal_Lectin	coord: 466..546 e-value: 1.9E-12 score: 47.4
IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	PROSITE	PS50228	SUEL_LECTIN	coord: 456..547 score: 9.788

Blast

[Close]

BLAST of TCONS_00064167-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.625e-78
Identity = 126/289 (43.60%), Postives = 174/289 (60.21%), Query Frame = 0

Query:  158 RINGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCEALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPEPSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRERSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCGYGIETRMRTCTNPAPQHNGKGCEGSTKDTRACYKKACPVNGKWSAWSSYTSCSKSCKGGQKSRTRSCTNPAPAHNGRSCSGSTKETVDCNQKVRCP 446
            +++GG+ +W+ W  C   CG+G+Q R R CN P+P+ GG  C+  G   + R C  K CPVDG +S WS + +C+ SCG G   RTRTC NP   +GG+ CEG A E   C + PCPV G +S W  +G C+ +CG G + R R C  P PA GG  CDG   + + CN ++CP+ G W++W S+ ACS  CG G   R R C++P PQ+ G+ CEGS   +  C    CP +G WS WS + +CS++C GGQ  R R+C NP P++ GR+C G   +   CN  + CP
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CP 4812

HSP 2 Score: 249.595 bits (636), Expect = 1.482e-71
Identity = 118/288 (40.97%), Postives = 163/288 (56.60%), Query Frame = 0

Query:  159 INGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCEALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPEPSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRERSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCGYGIETRMRTCTNPAPQHNGKGCEGSTKDTRACYKKACPVNGKWSAWSSYTSCSKSCKGGQKSRTRSCTNPAPAHNGRSCSGSTKETVDCNQKVRCP 446
            ++G + +W+ W +C + CG G Q R R CNNP    GG  CE  G+A +   C ++ CPV G +S W  +G CS SCG G   R R C NP P+ GG  C+G   + Q C    CP+ G ++ W+ +  C+++CGGG R R R C+ P P +GG+ C+G   +++ CNS  CP  G WS W  +G CS+ C  G   R RTC NP P + G+ C G     + C    CPV+G W +W S++ CS SC GG+K+R R C +P P   GR C G T +   CN +  CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869

HSP 3 Score: 165.236 bits (417), Expect = 4.225e-43
Identity = 87/204 (42.65%), Postives = 112/204 (54.90%), Query Frame = 0

Query:  159 INGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCEALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPEPSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRERSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCGYGIETRMRTCTN 362
            I+G +  WA W+ C   CG G + R RGC++P+P  GG  CE  G   QS  C    CP  G +S WS +G CS +C GG M+R RTC NP PSNGG+ C G   + Q C  D CPVDG +  W  + QC+ +CGGG + R+R C  P P  GG+ C G T +   CN Q+CP  G   + GS      D  +GI     T T+
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCE--GSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP-GGPQRARGSVIGNINDVEFGIAFLNATITD 4899

The following BLAST results are available for this feature:

BLAST of TCONS_00064167-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064167-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	2.625e-78	43.60	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00064167-protein (polypeptide) - C. hemisphaerica