TCONS_00063598-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063598-protein
Unique NameTCONS_00063598-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length154

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063598-protein ID=TCONS_00063598-protein|Name=TCONS_00063598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSRYKLFLGHLSPDARTRDVERFFKDHGFSKSIVEVVVKTGYGFVIFDDR
RDADDAIYELNGKELLGGRLQVEFAKPSGRFEDRDGGGRGRGGGYGGSGG
GGGGGYRSDRDRGGRGGGGGGGGGGYGRPYNTEYRIIVENLSTRASWQHL
LLCT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039859XLOC_039859Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063598TCONS_00063598Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..73
e-value: 1.5E-13
score: 61.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..68
e-value: 3.0E-12
score: 46.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..77
score: 14.129
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 4..105
NoneNo IPR availableGENE3D3.30.70.330coord: 2..79
e-value: 2.9E-17
score: 62.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..125

Blast
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BLAST of TCONS_00063598-protein vs. Swiss-Prot (Human)
Match: SRSF4 (Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.697e-32
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 0 
Query:    5 KLFLGHLSPDARTRDVERFFKDHGFSKSIVEVVVKTGYGFVIFDDRRDADDAIYELNGKELLGGRLQVEFAKPSGRFEDRDGGGRGRGGGYGGSGGGGGGGYRSDRDRGGRGGGGGGGGGGYGRPYNTEYRIIVENLSTRASWQHL 150
            ++++G LS  AR RDVERFFK +G    I+EV +K GYGFV FDD RDADDA+YELNGK+L G R+ VE A+           G  R G Y GSG  G G  RS RD+             YG P  TEYR+IVENLS+R SWQ L
Sbjct:    3 RVYIGRLSYQARERDVERFFKGYG---KILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHAR-----------GPRRDGSY-GSGRSGYGYRRSGRDK-------------YGPPTRTEYRLIVENLSSRCSWQDL 120
The following BLAST results are available for this feature:
BLAST of TCONS_00063598-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF46.697e-3251.37Serine/arginine-rich splicing factor 4 OS=Homo sap... [more]
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