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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00063467-protein ID=TCONS_00063467-protein|Name=TCONS_00063467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQN
MYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLELEEK
YGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYA
ELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISRELRRRLYGRRRGG
AGVGGGASSGPLVRRGRSRSFSPSPPRRKSRSRSPKRRSPRRRRSRSPR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003676 | nucleic acid binding |
| GO:0046872 | metal ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0089701 | U2AF |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000398 |
mRNA splicing, via spliceosome |
| cellular_component |
GO:0089701 |
U2AF |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003723 |
RNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR009145 | U2 auxiliary factor small subunit | PRINTS | PR01848 | U2AUXFACTOR | coord: 174..186
score: 65.38
coord: 37..57
score: 54.76
coord: 83..98
score: 48.01
coord: 139..163
score: 57.27
coord: 18..37
score: 79.77
coord: 112..134
score: 64.03 |
| IPR003954 | RNA recognition motif domain, eukaryote | SMART | SM00361 | rrm2_1 | coord: 74..151
e-value: 7.2E-18
score: 75.4 |
| IPR000571 | Zinc finger, CCCH-type | SMART | SM00356 | c3hfinal6 | coord: 157..183
e-value: 0.24
score: 20.5
coord: 13..39
e-value: 0.0071
score: 25.6 |
| IPR000571 | Zinc finger, CCCH-type | PFAM | PF00642 | zf-CCCH | coord: 15..38
e-value: 1.1E-6
score: 28.3
coord: 158..182
e-value: 4.8E-6
score: 26.2 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 12..40
score: 12.455 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 157..184
score: 11.911 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 45..154
e-value: 8.5E-21
score: 73.4 |
| None | No IPR available | GENE3D | 4.10.1000.10 | | coord: 11..44
e-value: 9.2E-4
score: 18.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 197..249 |
| None | No IPR available | CDD | cd12538 | RRM_U2AF35 | coord: 43..154
e-value: 2.83064E-68
score: 207.203 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 96..148
e-value: 1.9E-5
score: 24.3 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 73..155
score: 9.746 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 86..158 |
Blast
BLAST of TCONS_00063467-protein vs. Swiss-Prot (Human)
Match: U2AF5 (Splicing factor U2AF 35 kDa subunit-like protein OS=Homo sapiens GN=U2AF1L5 PE=1 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 5.921e-117 Identity = 156/194 (80.41%), Postives = 170/194 (87.63%), Query Frame = 0 Query: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQNMYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISRELRRRLY 194
MAEYLASIFGTEKDKVNCSFYFKIGACRHGD+CSRLHNKPTFSQTI L N+Y+NPQN + + DG+ +SDVE QEHYD FFE+VF E+EEKYGE+EEMNVCDNLGDHLVGNVYVKFR EEDAEKA +NNRW+NGQPI+AELSPVTDFRE+CCRQYEMGECTRGGFCNFMHLKPISRELRR LY
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCA--------VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
The following BLAST results are available for this feature:
BLAST of TCONS_00063467-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| U2AF5 | 5.921e-117 | 80.41 | Splicing factor U2AF 35 kDa subunit-like protein O... | [more] |
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