TCONS_00063442-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063442-protein
Unique Name	TCONS_00063442-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1391

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063442-protein ID=TCONS_00063442-protein|Name=TCONS_00063442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1391bp
MAPMMIETHQEQQQQIQQYVPNQKGISLQMLIDNLLQQTFHDLSVLSELL
PRKSDIERKIEIIKFATKARQQFIRILALVKWAAGEDRVDKFQAMSMGLL
QQNEFYIHTADTLFHLSRGDLVNARLPNFSLPTAVDVLTTGTFNRLPKCI
RKIVPEEPISATQKAQTLKNLNEVIQHRLVTSKIPPEFNSIKIGDGKLVL
RVEHEFEAVLMLPGDGADIPWRLLHIDFLMEDYETGDGRSLVHGMQVHFI
HQIVQSRLMVQEDSLAELYNTLHNFCLSLHLEVLHTQSKRLINERWGEHV
RVEEYVPAEKLTLSFFRASARFVKPEKKPPSVCITQSKEKKQALIMRYVP
PLGDDDDGKSDNGIYISPDCLSIEKIFAIAVRSYSISMLKNLLGQLSVDE
FFKENAALNLDLPSLEFKPFQCCMKKESVSVSIDSRTGFLLLNVGVKNPK
VNLMKQLQIYLRTDIHKFIEEFHALRCSLYLEKSRSSVYLQPVIVFEQFP
VKHCNLTSLQRVPKHRLFLQFKKHPDYFLVLGIDISNDIPSKPIKDKYYL
VQAIDNPEISHNDSINSTENMDNLKIANCFQLNSDTLLNKRKITEKLPVE
GPVTPVLKNDIREELSLMKRKERLQERAEKRKRLECANEKVKVVMNNEIE
EDQHLKEDSLINNILSSILLRSFQRIPFIELCKQLVAADILFHGVLEESH
GSPNIILLDYPTPPGCNKKDFESFKEQILNSTMYLDVELSQWVLTFSFKK
PLMESCCEDVRHKGISFDYNLQCGGVENQEKKESFLADRILSDLRGLFRL
YKHAINVDQYLKALNSTYSISTFVFKRYDMKSLVFTYSRVQGYEVTFSYD
REKEYQVTFMKNGNTKEPCPHSLTQEYIQQEFNRHQNLQYSLKVIHDTYA
PLKAICRLTIIPELTLSNRALQVVNNFTVIAHSSTQINMVYRNAHVLDLY
LMESSVLIKDGTLYLTDTTKAMRGFNPIPQLTAFLHLYAEKYSGGSAGLD
YPVTPGGMELDQSTDNYSQPPSNHASIVISSPQPFNQFTAPSPGNPASVP
SPGTFLQQPSPAAIGNAMSPSTWPGSPPLVQGSPHPARQNTATPQSRMML
SSINVTHAYTPVLLTHESFKMLLKPDNDNKENSNCVCPLEKFFGSIQLRS
HLIRVLRNDDTLKHEKTENGVVVFSSCAGKIGPENGLQYSISLNQATMDY
LVLRVTPARGHEAAWQIQEELSILEQYFEHKVASPPFRVTALTSFARILG
AQQKILKDFMKVFKLEMQSNWADYHYRVEVVLTIPPPIVLPGTSAVALKT
KNLLFLQLTDLQNEENIVVLTLVHEVRTNLVHALEYIPLKNVPAEPTSWA
VRARSQVITFLNQIAQTIAQRDFPIFRAVSLLVTKFQVKDS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039764	XLOC_039764	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063442	TCONS_00063442	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013947	Mediator_Med14

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 611..647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1013..1094
IPR013947	Mediator complex, subunit Med14	PFAM	PF08638	Med14	coord: 26..212 e-value: 1.3E-56 score: 191.0

Blast

[Close]

BLAST of TCONS_00063442-protein vs. Swiss-Prot (Human)
Match: MED14 (Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens GN=MED14 PE=1 SV=2)

HSP 1 Score: 552.362 bits (1422), Expect = 6.269e-172
Identity = 420/1395 (30.11%), Postives = 688/1395 (49.32%), Query Frame = 0

Query:   28 LQMLIDNLLQQTFHDLSVLSELLPRKSDIERKIEIIKFATKARQQFIRILALVKWAAGEDRVDKFQAMSMGLLQQNEFYIHTADTLFHLSRGDLVNARLPNFSLPTAVDVLTTGTFNRLPKCIR-KIVPEEPISATQKAQTLKNLNEVIQHRLVTSKIPPEFNSIKIGDGKLVLRVEHEFEAVLMLPGDGADIPWRLLHIDFLMEDYETGDGRSLVHGMQVHFIHQIVQSRLMVQEDSLAELYNTLHNFCLSLHLEVLHTQSKRLINERWGEHVRVEEYVPAEKLTLSFFRASARFVKPEKKPPSVCITQSKEK--KQALIMRYVPPLGDDDDGKSDNGIYISPDCLSIEKIFAIAVRSYS---ISMLKNLLGQLSVDEFFKENAALNLDLPSLEFKPFQCCMKKESVSVSIDSRTG-FLLLNVGVKNPKVNLMKQLQIYLRTDIHKFIEEFHALRCSLYLEKSRSSVYLQPVIVFEQFPVKHCNLTSLQRVPKHRLFLQFKKHPDYFLVLGIDISNDIPSKP--IKDKYYLVQAIDNPEISHNDSINSTENMDNLKIANCFQLNSDTLLNKRKITEKLPVEGPVTPVLKNDIREELSLMKRKERLQERAEKRKRLECANEKVKVVMNNEIEEDQHLKEDSLINNILSSILLRSFQRIPFIELCKQLVAADILFHGVLEESHG-SPNIILLDYPTPPGCNKKDFESFKEQILNSTMYLDVELSQ-WVLTFSFKK-PLMESCCED---VRHKGISFDYNLQCGGVENQEKKESFLADRILSDLRGLFRLYKHAINVDQYLKALNSTYSISTFVFKRYDMKSLVFTYSRVQGYEVTFSYDR-EKEYQVTFMKNG-NTKEPCPHSLTQEYIQQEFNRHQNLQYSLKVIHDTYAPLKAICRLTIIPELTLSNRALQVVNNFTVIAHSSTQINMVYRNAHVLDLYLMESSVL-IKDGTLYLTDTTKAMRGFNPIPQLTAFLHLYAEKYSGGSAGL----DYPVTP-GGMELDQ-------------------STDNY--SQPPSNHASIVISSP------QPFNQFTAPSPGNPASVPSPGTFLQQPSPAAIGNAMSPST--------------------------WPGSPPLVQGSPHPARQNTATPQSRMMLSSI-NVTH---------------------------AYTPVLLTHESFKMLLKPDND-----NKENSNCVCPLEKFFGSIQLRSHLIRVLRNDDTLKHEKTENGVVVFSSCAGKIGPENGLQYSISLNQATMDYLVLRVTPARGHEAAWQIQEELSILEQYFEHKVASPPFRVTALTSFARILGAQQKILKDFMKVFKLEMQSNWA-DYHYRVEVVLT---IPPPIVLPGTSAVALKTKNLLFLQLT 1309
            L  LI+ LL + + +L VL++LLPRKSD+ERKIEI++FA++ RQ F+R+LALVKWA    +V+K   +S  L QQ   ++ TAD L  L+R  LV+ARLP+F++P A+DVLTTG++ RLP CIR KI+P +PI+  +K  TL  LN++++HRLVT+ +PP+  ++ + +G++  RVE EFEA L + GD  D+PWRLL ++ L+ED ETGDGR+LVH MQ+ FIHQ+VQSRL   E  L ++YN LH+FCLSL LEVLH+Q+  LI ERWG+ V+VE Y   + L+LS +       K           +  E    + L + + PPL   D    +  + I  D LSIEK+   +V + +   +  LK +L   + +    EN+++   LP+L     + C   E + + +D  +G F L+  G+    ++ M++    +  D+ + I     L+  L  ++ + S+   P I  E   + + +   +  + K++LF++  + P Y++V+ +    ++P+KP  +  KYY +            S+N+ +  D+  +A   Q                          K +I++   + + K   Q R   +++L  +++   V    E ++ +   E    N +L+  +      +PF+ L  +L   +I   GV  E  G S  I LL  P   G  ++  ++    +L+ T  L    ++ WV    F   PL  +   +    RH  ++++ NL    V  ++  E F     L+D   + RLY+  +   + L  + +  +I + V + Y+ + L+  Y   +G  ++  ++   +++ ++    G N+     H+     +Q+ FN+  N+   L+V+ DT APL AI +L  +P L L+ R       F+++  SST I + +RN + +D+Y     V+ I+DG   L D +K + GF P P L  FL+++ +             D P +P GG  +D                    ++  Y  + PP+++ S V  SP       P N   A SP      PSP +F+  P P++ G ++ P                            WPGSP +   SP  AR    +P +  + S + + +H                           A  P +LTH +  +LL P            S    PLE+F GS+ +R HL R+++ +        E GV++F +        + L+  ++L+  T   L L+VTP    +  W+  +EL +LE++FE +VA PPF+   L +F ++LGA   IL+D + + KLE+  + A    + V+  LT     PPI  PGT AV LK+K L FLQLT
Sbjct:   51 LSTLIEFLLHRAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKI--DHLSIEKLLIDSVHARAHQKLQELKAILRGFNAN----ENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEK---SVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEM---LEVPNKPTQLSYKYYFM------------SVNAADREDSPAMALLLQ------------------------QFKENIQD--LVFRTKTGKQTRTNAKRKL--SDDPCPV----ESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYE-NLLSEPVGGRKVVEMF-----LNDWNSIARLYECVLEFARSLPDIPAHLNIFSEV-RVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPA-ARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKT--------DALKCRVALSPKTNQTLQLKVTPENAGQ--WK-PDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLT 1370

The following BLAST results are available for this feature:

BLAST of TCONS_00063442-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MED14	6.269e-172	30.11	Mediator of RNA polymerase II transcription subuni...	[more]

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TCONS_00063442-protein (polypeptide) - C. hemisphaerica