TCONS_00062934-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062934-protein
Unique NameTCONS_00062934-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062934-protein ID=TCONS_00062934-protein|Name=TCONS_00062934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=651bp
MSSLTKNNTMYLSSGSDALMHNNHHKSTLNYKQKHRRNILTTTRTTTLRG
EDMAKVNEHSPQGYHHHNHQHQYYQHHFLNQHLLTSPPPTTSLTTNKTNN
KMTVFDERREIDQVLDCVKKDGCRYYKIRWKDTWEREEYLTPFSRTINRF
WEDVQASRKLDDEKEQSLFNKIPDNVKEHDELKQTQQIERSESPIQDRPP
SPVYRNGAEYSPQASDLSDHSPYNTSLKSPSSDISDKTFQTGDYEEASTL
EDSSPQAIPSGRRKGKPKKLVRDEQDEEENNTLEAGHSQSRTPELKAALS
PALSHASAKDLLTVEIPENRASSTSPHQLTAGKKRNGSVEEYPVMIIREN
SEDTMSRQNKTQIHKPDSLRLNEEPSRKRPRIPSPEYGHDFPITIPSTVA
ELVTRSEKYTSPVPSPEESPLYPRLPQEAFHPETYFSAYPTERLFKPVRG
YHHNNNTPLMYHSQVITGRKRSPVPHYMYTDIHNPTALSATKPTSKLESS
NLLLKVTDERPPKRPDTLLPPSTRQPYPGYPPATLQPQPTKPRSKENTSS
KSKTPTKYLITADGEQRPQCPECFQTFKKRAALERHMMIHRGIKPFQCHF
CNQRFRQKHHLQGHVMLHTGERPHSCALCNKRFRMRHHLLEHERISHKVF
R
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039422XLOC_039422Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062934TCONS_00062934Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR016197Chromodomain-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 596..618
e-value: 0.17
score: 21.0
coord: 624..647
e-value: 0.72
score: 18.9
coord: 568..590
e-value: 0.0065
score: 25.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 598..618
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 626..647
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 570..590
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 596..623
score: 14.544
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 624..651
score: 10.97
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 568..595
score: 12.424
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 557..605
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 590..642
NoneNo IPR availableGENE3D3.30.160.60coord: 602..615
e-value: 4.2E-9
score: 35.8
NoneNo IPR availableGENE3D3.30.160.60coord: 549..581
e-value: 6.3E-5
score: 22.5
NoneNo IPR availableGENE3D3.30.160.60coord: 582..601
e-value: 3.4E-12
score: 46.1
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 569..590
e-value: 8.5E-4
score: 19.6
NoneNo IPR availableGENE3D2.40.50.40coord: 109..167
e-value: 8.0E-6
score: 25.3
NoneNo IPR availableGENE3D2.40.155.10coord: 616..649
e-value: 5.1E-10
score: 39.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 503..556
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..391
NoneNo IPR availableCDDcd00024CHROMOcoord: 107..152
e-value: 0.00164755
score: 36.0879
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 97..153

Blast
[Close]
BLAST of TCONS_00062934-protein vs. Swiss-Prot (Human)
Match: MYNN (Myoneurin OS=Homo sapiens GN=MYNN PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.621e-18
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:  567 RPQCPECFQTFKKRAALERHMMIHRGIKPFQCHFCNQRFRQKHHLQGHVMLHTGERPHSCALCNKRFRMRHHLLEHERISH 647
            +P C  C + F + ++L RHM IH+G+KP+ CH C + F Q + L+ HV  HTGE+P+ C LC+K F  +  L+ H R+ H
Sbjct:  301 KPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHH 381
The following BLAST results are available for this feature:
BLAST of TCONS_00062934-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYNN1.621e-1843.21Myoneurin OS=Homo sapiens GN=MYNN PE=1 SV=1[more]
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