SOX1 (polypeptide) - C. hemisphaerica

Overview
NameSOX1
Unique NameTCONS_00062847-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062847-protein ID=TCONS_00062847-protein|Name=SOX1|organism=Clytia hemisphaerica|type=polypeptide|length=612bp
VPKNILCRILFISKIIVYLTWFGDFSRVLLIKGTLGLNKLESQMLPSAKM
LKKTTYTFRIQRKQAKSIIGNLDLEKTMTVNDEGNDNILSSTSTHLSTST
ISDSQSPLSPGELKKFGEDVIGNCPEGDGDIKSPTDDKDEISNAVNSVLN
GYDWTLVPMPVRTGPNGRAARRHVKRPMNAFMVWAQAARRKLADQYPHLH
NAELSKTLGRLWRMLSEEEKKPFMDEAERLRLQHKKDHPDYKYQPRRKKQ
SKDGLPDNNEQEITASDLLRVIKGDKGATLTKQRTESTSDYSEGQSPQMS
PYPECSPKSSCSSSNPFSPNEIGSNKNSDNTGQTSVTEPIDLPNVSLESM
IKSNIQCIGSKPAINELDIHSLDQYLPTTEGFNFEQKTTQSSSTKTQAVY
NKMPSYQYPSSITRNEYSPTYYQMNTIDSQVSASSTRHYRASNRYNPYQY
DSTKSYTNMMGVDCNNQNLNFNQYPSTSPTINTNIPTTCKQDNFVLSGNT
STCLYSNVSNHQQHYNNTLQQQQQNATNLQQQNTTNYTDCSLVGGYTSFT
NAQQQRTSPVSSNQQIQNPNNITINQNVTINQQQQHQQPITCWQSSMYTD
SIYPNSGGYNRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039364XLOC_039364Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062847TCONS_00062847Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR022151Sox_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 512..532
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..339
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 173..243
e-value: 4.93063E-32
score: 117.784
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 173..243
e-value: 1.4E-26
score: 104.3
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 168..539
e-value: 1.4E-29
score: 102.0
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 174..242
e-value: 3.3E-25
score: 88.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 174..242
score: 22.22
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 170..246
IPR022151Sox developmental protein N-terminalPFAMPF12444Sox_Ncoord: 93..162
e-value: 3.3E-11
score: 44.0

Blast
[Close]
BLAST of SOX1 vs. Swiss-Prot (Human)
Match: SOX9 (Transcription factor SOX-9 OS=Homo sapiens GN=SOX9 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 9.035e-60
Identity = 120/265 (45.28%), Postives = 157/265 (59.25%), Query Frame = 0 
Query:  125 PEGDGDIKSPTDDKDE---ISNAVNSVLNGYDWTLVPMPVRTGPNGRAARR-HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGRLWRMLSEEEKKPFMDEAERLRLQHKKDHPDYKYQPRRKKQSKDGLPDNNEQ----EITASDLLRVIKGDKGATLTKQRTESTSDYSEGQSP-QMSPYPECSPKSSCSSSNPFSPNEIGSNKNSDNTGQTSVTEPIDLPNV---SLESMIKSNIQCIGSKPAINELDIHSLDQYLP 377
            P+G+ D+K  +++      I  AV+ VL GYDWTLVPMPVR   NG +  + HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLG+LWR+L+E EK+PF++EAERLR+QHKKDHPDYKYQPRR+K  K+G  +  E      I+ + + + ++ D           S+S  SE  SP + S   +  P    +      P +    +      +     PID  +V    L S + SNI+           D++  DQYLP
Sbjct:   54 PKGEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRV--NGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADS--------PHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIET---------FDVNEFDQYLP 299
The following BLAST results are available for this feature:
BLAST of SOX1 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX99.035e-6045.28Transcription factor SOX-9 OS=Homo sapiens GN=SOX9... [more]
back to top