TCONS_00062555-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062555-protein
Unique Name	TCONS_00062555-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	716

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062555-protein ID=TCONS_00062555-protein|Name=TCONS_00062555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=716bp
SLVLGYICRRKNFIQNMIKQARITTFVFTLVLTHHHGNCNTVDTLSSILK
VTQNELFNNGKGNIAEFSLKNELLGSSKQTANISCHSPANQTIEDSSISD
SIEMCHFASMLHCITSHFLTGRVFFYFDDRFKYNFTRNYIGNMSQVERQR
FHAFHFETKDRILDTLRGFVITVLQSNVDVVAVFLNEDIFRMLMDVWIRE
GYEQVMSWLYIDGNRKIHYYAPKCEYFQEPMERPLQTIDAITTENTCNSE
AFKTLQRGVKRCNRRHNHPLIRVAVKVEAPWVVETQGNYVNGEIYCERAV
VCNMPKHTDNGEIVWERKCCTGSMIEIFLEVIKFAHIQKYMVYGVPDGRY
GGIVSCPNNNFTDATKCQWDGLFNELLQGRADIAATSLTWTSARQAVADI
PEYIDLSPLSIVMNREIRNKPIITWSYVKMVDSSLALTLLLTYFVLYIAV
LIIEHASNIGNRRSFYTLHEILTYLGGLTFQRDLGGRNPFFWPSRVPSLM
YAFATTIIMTTYTADLTAKGVVVEESNFKGMKDSRIVNPSNDFIFSVPVA
TYTSYYFEVNVDERYRKSYEFMKPYQSNIDLDGVEKVYKQEIDAYISDSE
SLTAVVNLAKYCSALVMEPLDITALPYSFALQKNSKFTPFFSKHIFNMKF
EGTIKAIRKKWYYRSDRCAGADAKAEQFDWKYAISLEVLLFGATCVCVFI
LIFENVFARLHWKRQT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039191	XLOC_039191	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062555	TCONS_00062555	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001320	Iontro_rcpt
IPR001638	Solute-binding_3/MltF_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0004970	ionotropic glutamate receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0004970	ionotropic glutamate receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001320	Ionotropic glutamate receptor	SMART	SM00079	GluR_14	coord: 298..664 e-value: 2.9E-4 score: -46.5
None	No IPR available	GENE3D	3.40.190.10		coord: 266..446 e-value: 5.8E-13 score: 48.1 coord: 513..669 e-value: 1.7E-7 score: 30.3
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 271..416 coord: 526..665
IPR001638	Solute-binding protein family 3/N-terminal domain of MltF	PFAM	PF00497	SBP_bac_3	coord: 368..662 e-value: 8.1E-12 score: 44.9

Blast

[Close]

BLAST of TCONS_00062555-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.214e-21
Identity = 95/430 (22.09%), Postives = 185/430 (43.02%), Query Frame = 0

Query:  290 VNGEIYCERAVVCNMPKHTDNGEIVWE-RKCCTGSMIEIFLEVIKFAHIQKYMVYGVPDGRYGGIVSCPNNNFTDATKCQWDGLFNELLQGRADIAATSLTWTSARQAVADIPEYIDLSPLSIVMNREIRNKPIITWSYVKMVDSSLALTLLLTYFVLYIAVLIIEHASNIG--------NRRSFYTLHEILTYLGGLTFQRDLGGRNPFFWPSRVPSLMYAFATTIIMTTYTADLTAKGVV-VEESNFKGMKDSRIVNPSNDFIFSVPVATYTSYYFEVNVDERYRKSYEFMKPYQSNIDLDGVEKVYKQEIDAYISDSESLTAVVNLAKYCSALVMEPLDITALPYSFALQKNSKFTPFFSKHIFNMKFEGTIKAIRKKWYYRSDRCAGADAKAEQFDWKYAISLEVLLFGATCVCVFILIFENVFAR 709
            VNG+    + V+C  P  T  G       +CC G  I++ +++ +  +   Y V+ V DG++G      N+N     K +W+G+  ELL G+AD+    LT  + R    +  +      L+I++ +EI    +   S+++   S+L L + L+  V+ + + +++  S  G              TL   + +  G+     +G   P  + +R+  +++A    II+ +YTA+L A  V+   E    G+ D R+ NPS+ FI++    +    YF   V+      Y  M+ +      + ++ V   ++ A+I DS  L      ++ C  +    L   +  +   ++K+S +    S  I      G ++ + K W  R   C           ++    + +L+ G     +F++  E  + R
Sbjct:  426 VNGDPV--KKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFT-YEVHLVADGKFGTQERVNNSN-----KKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD--SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE--LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLE--FEASQKCDLVTTGELFFRS-GFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTW-VRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKR 839

The following BLAST results are available for this feature:

BLAST of TCONS_00062555-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NMDZ1	1.214e-21	22.09	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi...	[more]

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TCONS_00062555-protein (polypeptide) - C. hemisphaerica