TCONS_00062252-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062252-protein
Unique Name	TCONS_00062252-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	491

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062252-protein ID=TCONS_00062252-protein|Name=TCONS_00062252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MKTDQSNMEEIAMVNYGKEEEENSDMEEMSLLEKLQENLNAFKIIFLICL
FGTGSWVEINGIWVELPLLVNQSPQSWSLPSYLTVVIQIANLGPILYFLL
NKYCKKKNGDKLVTEIPANYIILSVGVISCFLLAFLWERTSLIGGTSYSS
ALIGLSFFLALVDCTSSLTFLPFMAYFPAKYMTAYYIGEGMSGFLPSIIA
LIQGIGGQSYTCNSHTNLKNISLISGNMVLRNVTESVPYYYYTEPRFSTR
IFFICIGIMMLVSLASFVLLVRIKKGTQLRIQKTKENNYPLKNTGYTDDY
DLASIRHDEQTPPILEGDSIKIKISKKKLIYLLVLNAIINGLSNGVLPAL
QSYACLPYGNNIYHLTLVISAIANPVCCFLYFFISLKSTIGISIGVLVYI
VSAGFTIGIAAASPCPILNDSKFGGILVLLVTVFGVGLVNYLKTAISTVL
RNHGYRVLFWCGVSVQIGSFIGAVITFVSVNNVGLFTQAFX

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039017	XLOC_039017	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062252	TCONS_00062252	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009357	Riboflavin_transptr
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0032218	riboflavin transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0032217	riboflavin transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005887	integral component of plasma membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032218	riboflavin transport
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0032217	riboflavin transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 18..290 e-value: 8.4E-7 score: 27.8
IPR009357	Solute carrier family 52, riboflavin transporter	PFAM	PF06237	DUF1011	coord: 327..424 e-value: 7.6E-31 score: 106.3
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 245..488
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 247..278 coord: 20..202

Blast

[Close]

BLAST of TCONS_00062252-protein vs. Swiss-Prot (Human)
Match: S52A3 (Solute carrier family 52, riboflavin transporter, member 3 OS=Homo sapiens GN=SLC52A3 PE=1 SV=4)

HSP 1 Score: 295.049 bits (754), Expect = 6.846e-95
Identity = 171/470 (36.38%), Postives = 263/470 (55.96%), Query Frame = 0

Query:   41 AFKIIFLICLFGTGSWVEINGIWVELPLLVNQSPQSWSLPSYLTVVIQIANLGPILYFLLNKYCKKKNGDKLVTEIPANYIILSVGVISCFLLAFLWERTSLIGGTSYSSALIGLSFFLALVDCTSSLTFLPFMAYFPAKYMTAYYIGEGMSGFLPSIIALIQGIGGQSYTCNSHTNL----------KNISLISGNMVLRNVTESVP---------YYYYTEPRFSTRIFFICIGIMMLVSLASFVLLVRIKKGTQLRIQKTKENNYPLKNTGYTDDYDL--ASIRHDEQTPPILEGDSIKIKISKKKLIYLLVLNAIINGLSNGVLPALQSYACLPYGNNIYHLTLVISAIANPVCCFLYFFISLKSTIGISIGVLVYIVSAGFTIGIAAASPCPILNDSKFGGILVLLVTVFGVGLVNYLKTAISTVLRNHGYRVLFWCGVSVQIGSFIGAVITFVSVNNVGLFTQA 489
            AF +  L+C+FG GSWV ING+WVELPLLV + P+ W LPSYLTVVIQ+AN+GP+L  LL+ +         ++E+P  + +L VG ++C + AFLW  TS +    +S A + L+FFLALVDCTSS+TFLPFM+  P  Y+T +++GEG+SG LP+++AL QG G    TC + T +          +   +  G  V R +  ++P            Y    FS  +FF+ + IMM   L +F +L R  +  +  ++    +   L +    ++ DL  A      Q    LE  +     +    IY LV  A +N L+NG+LP++Q+Y+CL YG   YHL   +S +ANP+   +  F+  +S + + +  ++     G+ + +A  SPCP+L     G +L++   V   G ++Y+K  +  VLR+     L WCG +VQ+GS +GA++ F  VN + LF+ A
Sbjct:    2 AFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHF-----RPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLT--TCVNVTEISDSVPSPVPTRETDIAQG--VPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHLAFIYTLV--AFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSA 460

The following BLAST results are available for this feature:

BLAST of TCONS_00062252-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062252-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S52A3	6.846e-95	36.38	Solute carrier family 52, riboflavin transporter, ...	[more]

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TCONS_00062252-protein (polypeptide) - C. hemisphaerica