TCONS_00061931-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061931-protein
Unique NameTCONS_00061931-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061931-protein ID=TCONS_00061931-protein|Name=TCONS_00061931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp
MEVFVFLLLTCVQCLLVFGDVCIPAKHRKFTKEDLKKDFNTKEISKSAAF
QSIVTNEKTNKLYTGGRNSITVLDGTNLNNISHISWKVDNERCLSEGLVP
KEYCNNHVTLINLYKDKIVACGTGSTRPVYRVFSQDSLNVTREGNRLCAS
PNPEHRVIGQITSLGEMIVATYKDQKGRDSEVHGSFMPEKLPVYRAKLKT
GADDVKPSADFIKSFYIGNSVYKFFIEEAEENGNQQTPTVGRFCQTDNGG
PSFISNRLWTTFRKARLNCFYNRADNKMVFRHLVDVDYDATKKIFYAIYT
MTKHESLASAICTFKFEDLQEAFSGNFLAKNENNKEWNEIQNPKIFYGCK
VNRTKLSSSINPTSPGKEPTNSLNLESSMFVSSHRIMAKTISTQPDIFQY
MKPVTRFSKIAIDQFSGENKAQETLLNIIDDQGNIFTLHANLGNTKESCI
IEEIATGMENPKLFQMNHKERMLYITTSDGSRLMTYNVDSCARYNGKSDC
ISAHNPRCGWSMQTSQCLSVRSSGNETLLQDLNKCPNRLDIFSAWSSWKA
QEQEGGQEKYCLVRHRQCHSCDLKLCDVASTEVINCTANAVTDIDRWLKE
GAIDGSWSSWQEWSECGNHVKCGNDTKIRSRQCESPKPANGGRECIGRDF
ECTTCPKKKEIINIIWTQWSKWSNCPDKSVKYETRARTCSKPGQCNGKDT
EKRDCPEEGVAFGEWSNCSCMQKVQHRCPKSIVGCGTNCPRMELCQYQTC
EPKGCPTEKPPIGVDESVKNNSTKNETSPSDGGKNSTEYIEVVPLTPAPN
TGPMDSVCKDGYTFQLVELISIGVGIIASCFVIVLTIVFLMIRRDRKKNN
YSPNPVRKTKSQPLLNEDETDTLESNA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038831XLOC_038831Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061931TCONS_00061931Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001627Semap_dom
IPR000884TSP1_rpt
IPR002165Plexin_repeat
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001627Sema domainSMARTSM00630semacoord: 50..470
e-value: 2.6E-16
score: 70.2
IPR001627Sema domainPFAMPF01403Semacoord: 53..456
e-value: 1.1E-56
score: 192.3
IPR001627Sema domainPROSITEPS51004SEMAcoord: 27..486
score: 47.922
IPR001627Sema domainSUPERFAMILY101912Sema domaincoord: 44..494
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 607..660
e-value: 0.0028
score: 26.9
coord: 666..709
e-value: 6.8
score: 1.9
coord: 710..756
e-value: 5.9
score: 2.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 603..659
e-value: 2.3E-9
score: 36.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 604..751
score: 9.7
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 603..655
IPR002165Plexin repeatPFAMPF01437PSIcoord: 490..521
e-value: 5.9E-5
score: 23.4
NoneNo IPR availableGENE3D3.30.1680.10coord: 491..540
e-value: 1.2E-7
score: 31.4
NoneNo IPR availableGENE3D2.30.90.10coord: 665..705
e-value: 9.2E-5
score: 22.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 761..787
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 849..877
NoneNo IPR availableSUPERFAMILY103575Plexin repeatcoord: 491..525
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 23..484
e-value: 2.1E-63
score: 213.9

Blast
[Close]
BLAST of TCONS_00061931-protein vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 8.596e-65
Identity = 190/717 (26.50%), Postives = 304/717 (42.40%), Query Frame = 0 
Query:   22 CIPAKHRKFTKEDLKKDFNTKEISKSAAFQSIVTNEKTNKLYTGGRNSITVLDGTNLNNISHISWKVD---NERCLSEGLVPKEYCNNHVTLINLYKDKIVACGTGSTRPVYRVFSQDSLNVTRE---GNRLCASPNPEHRVIGQITSLGEMIVATYKDQKGRDSEVH---GSFMPEKLPVYRAKLKTGADDVKPSADFIKSFYIGNSVYKFFIEEAEEN--GNQQTPTVGRFCQTDNGGPSFISNRLWTTFRKARLNCFYNRADNKMVFRHLVDVDYDATKKIFYAIYTMTKHESLASAICTFKFEDLQEAFSGNFLAKNENNKEWNEIQNPKIFYGCKVNRTKLSSSINPTSPGKEPTNSLNLESSM-FVSSHRIMAKTISTQPDIFQYMKPVTRFSKIAIDQFSGENKAQETLLNII---DDQGNIFTLHANLGNTKESCIIEEIATGMENP----KLFQMNHKERMLYITTSDGSRLMTYNVDSCARYNGKSDCISAHNPRCGWSMQTSQCLSVRSSGNETLL-QDLNKCPNR-LDI---FSAWSSW-KAQEQEGGQEKYCLVRHRQCHS----CDLKLCDVASTEVINCTANAVTDIDRWLKEGAIDGSWSSWQEWSECGNHVKCGNDTKIRSRQCESPKPANGGRECIGRDFECTTCPKKKEII---NIIWTQWSKWSNCPDK-SVKYETRARTCSKPGQCNGKDTEKRDC 705
            C   +H   + +++           +  F  +  +    +L  G RN +  L   +L+ I  + W+ D    + C S+G   KE C N++ ++ +  D++  CGT +  PV    S  +L    +   G   C   +P+H     +T+ GE+  AT  D  GRD  ++   G   P +   Y +K            +F+ S+ IGN  Y FF E A E+  G        R C+ D GG  F+    WTTF KARLNC     +    +  L    +     + Y I+T   +   ASA+C F    + +AFSG F  +  +   W    NP   + C      L  ++             NL+ +  F+  H ++ + ++T P    +M+  +RFS +A+D   G    +E L++II    D G I  +   L  T  SC++EEI    E      +  Q+ H + +L++   +   ++   +  C  Y  +S CI A +P CGW +   +C S+  S + T   Q ++ CP R L +   F  WS W      +G     CL R R C S    C    C+    E+ NC+ N               G W+ W  WS C     CG   ++R R C +P P +GGR C+G++ E   C   + ++   ++ WT W  W  C  +     + R R C     C G + E + C
Sbjct:   30 CQRTEHPVISYKEIGPWLREFRAKNAVDFSQLTFDPGQKELVVGARNYLFRLQLEDLSLIQAVEWECDEATKKACYSKG-KSKEECQNYIRVLLVGGDRLFTCGTNAFTPVCTNRSLSNLTEIHDQISGMARCPY-SPQHNSTALLTAGGELYAATAMDFPGRDPAIYRSLGILPPLRTAQYNSKWLN-------EPNFVSSYDIGNFTYFFFRENAVEHDCGKTVFSRAARVCKNDIGG-RFLLEDTWTTFMKARLNC-SRPGEVPFYYNELQSTFFLPELDLIYGIFTTNVNSIAASAVCVFNLSAIAQAFSGPFKYQENSRSAWLPYPNPNPHFQCGTVDQGLYVNL----------TERNLQDAQKFILMHEVV-QPVTTVPS---FMEDNSRFSHVAVDVVQG----REALVHIIYLATDYGTIKKVRVPLNQTSSSCLLEEIELFPERRREPIRSLQILHSQSVLFVGLRE--HVVKIPLKRCQFYRTRSTCIGAQDPYCGWDVVMKKCTSLEESLSMTQWEQSISACPTRNLTVDGHFGVWSPWTPCTHTDGSAVGSCLCRTRSCDSPAPQCGGWQCEGPGMEIANCSRN---------------GGWTPWTSWSPCS--TTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYC--NEHLLCPPHMFWTGWGPWERCTAQCGGGIQARRRICENGPDCAGCNVEYQSC 696
The following BLAST results are available for this feature:
BLAST of TCONS_00061931-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A8.596e-6526.50Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
back to top