TCONS_00061677-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061677-protein
Unique NameTCONS_00061677-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length136

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061677-protein ID=TCONS_00061677-protein|Name=TCONS_00061677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MGKFMKSGKVVLVLGGKYAGRKAIIVKNYDDGTQDRQYGHALVAGIDRYP
LKVTKSMGKKRVSKRSKIKTFVKIVNYNHLMPTRYSVDVPLNKSVVNKDV
LKDSSKRKRARTEVKAKLEDRYKSGKNKWFFQKLRF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038676XLOC_038676Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061677TCONS_00061677Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR001141Ribosomal_L27e
IPR014722Rib_L2_dom2
IPR018262Ribosomal_L27e_CS
IPR008991Translation_prot_SH3-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 4..31
e-value: 0.0061
score: 25.8
IPR005824KOWPFAMPF00467KOWcoord: 8..32
e-value: 2.3E-5
score: 24.1
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..136
e-value: 6.9E-38
score: 128.8
IPR001141Ribosomal protein L27ePRODOMPD009396coord: 57..136
e-value: 3.0E-30
score: 323.0
IPR014722Ribosomal protein L2 domain 2GENE3D2.30.30.30coord: 2..129
e-value: 3.8E-30
score: 103.9
IPR018262Ribosomal protein L27e, conserved sitePROSITEPS01107RIBOSOMAL_L27Ecoord: 125..136
NoneNo IPR availableCDDcd06090KOW_RPL27coord: 6..88
e-value: 3.14941E-44
score: 140.782
IPR008991Translation protein SH3-like domainSUPERFAMILY50104Translation proteins SH3-like domaincoord: 3..136

Blast
[Close]
BLAST of TCONS_00061677-protein vs. Swiss-Prot (Human)
Match: RL27 (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.652e-74
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 0 
Query:    1 MGKFMKSGKVVLVLGGKYAGRKAIIVKNYDDGTQDRQYGHALVAGIDRYPLKVTKSMGKKRVSKRSKIKTFVKIVNYNHLMPTRYSVDVPLNKSVVNKDVLKDSSKRKRARTEVKAKLEDRYKSGKNKWFFQKLRF 136
            MGKFMK GKVVLVL G+Y+GRKA+IVKN DDGT DR Y HALVAGIDRYP KVT +MGKK+++KRSKIK+FVK+ NYNHLMPTRYSVD+PL+K+VVNKDV +D + +++AR E K K E+RYK+GKNKWFFQKLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
The following BLAST results are available for this feature:
BLAST of TCONS_00061677-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL271.652e-7474.2660S ribosomal protein L27 OS=Homo sapiens GN=RPL27... [more]
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