|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00061475-protein ID=TCONS_00061475-protein|Name=TCONS_00061475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1145bp
MNSRCKREIKVLETQKKRALQKEDLTEAAKICNVIGETLSSFGCFDEAID
AHKEEVHLSEAINDVIGVAVGNRKVGECLCELRQFDDAIKHQQKHLKLAR
SVDNVLEQQRALATLGRTYFVQAEDFDDDPGGTKQCLKKSEKAYFQSLEL
CNTLSTSLTPKEFLQMKSRLYLNLGLVYEWKQDYKEALKFVSKALLISKE
QKLRENTYRCHYTLSGLYLNAKSYQKALQSAKSAVMIGKEMKSKQQELDA
QMQLGVTLLRLGEFSSALQALKQVYKASANENPQSIELIIKNLKFAMKGV
KLQTRLDCCTSEQERMTSYEHFGDLSYDVMCPEKAIEYYQKQLDVARELR
IEDKLIAPIYISIAVTYSECKEYGKALEFYQRELKLRKNDLKEKSSTYCA
IGKCLEDLERPYPEIKEIYMKAIECAQSSGHIKTILKAYKDWAEVVKVNE
GPIMHENVLKKIATLRQEMETEGDDSQEAVSSPLDDDGSDDVHLTPDEVE
MLESDDEGNDEEENHLSSTSSTKQRTSRESKKKVKKVNERGETPLHVAAI
NGNIARVEELLKLGADVKARDYCGWQPIHEASNHGFYDIVKLLLEYGSDV
NDPGGAHCGGITPLHDASQNGHLKVVKLLLEYNADVYVKCKEGHTPLQLV
QTAIRNDEEELTASDSQNSESLLALRRRVAVLLRDAMTKKKRKSLQRGTN
KSVAENRNRLMFEDFPDSETMGDRAGFQENAVESTDDDDDLSPGIPFKKK
KLNPEDDLLQRQLNQSTHEEKDSPESPQSPCIAKPFVPTDTDDLDMNVPR
MSSTTNQPDSENDDDDDEIMQLFQQQECSEKLEDEDSNYESMAEDMSPPV
VFVNDTTPDAIPSTSVASEDERPLEVGTSRTKNRPNAGRPNSRTQHKTSS
AQRRLQTRINFSRSPSPATNMRSSSPSMFTEGDRRLQDFIIDDESSRKKG
NGKQRQSRIDFTVNAPQGTSNSNTNHRPRNSTNTQNRRNLTTANKGPKSN
HRQRHIDNYHPIEIQDENDANVDNRLNTNHIQSTAAASTQPITRPSGPIF
RVKVRISNHCLLVPCQQADEKTIKWLIDQASERYYSLTGVATTISLQTQD
GAHLNPSDVITNVIDNNEEICGLVLGLKFPPLVEQYTTKCKEKGI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 2..22 |
| None | No IPR available | GENE3D | 1.10.150.160 | | coord: 177..220
e-value: 4.5E-8
score: 32.5 |
| None | No IPR available | GENE3D | 1.10.150.200 | | coord: 132..176
e-value: 0.088
score: 12.2
coord: 7..78
e-value: 2.4E-6
score: 26.9
coord: 296..364
e-value: 3.8E-7
score: 29.4
coord: 79..128
e-value: 1.8E-4
score: 20.8 |
| None | No IPR available | PFAM | PF13857 | Ank_5 | coord: 610..649
e-value: 2.3E-7
score: 30.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 690..815 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 468..540 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 854..1003 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 537..661
e-value: 1.13703E-33
score: 126.344 |
| IPR002110 | Ankyrin repeat | PRINTS | PR01415 | ANKYRIN | coord: 589..603
score: 40.08
coord: 541..556
score: 43.35 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 609..638
e-value: 3.0E-6
score: 36.8
coord: 573..602
e-value: 1.6E-4
score: 31.0
coord: 540..569
e-value: 8.1E-5
score: 32.0 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 540..572
score: 14.532 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 573..605
score: 11.033 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 609..641
score: 13.224 |
| IPR019734 | Tetratricopeptide repeat | SMART | SM00028 | tpr_5 | coord: 168..201
e-value: 0.0016
score: 27.7
coord: 316..349
e-value: 140.0
score: 5.0
coord: 248..281
e-value: 19.0
score: 12.6
coord: 357..390
e-value: 0.14
score: 21.2
coord: 29..62
e-value: 140.0
score: 4.9
coord: 208..241
e-value: 220.0
score: 3.1
coord: 69..102
e-value: 27.0
score: 11.2 |
| IPR019734 | Tetratricopeptide repeat | PFAM | PF13181 | TPR_8 | coord: 169..200
e-value: 0.043
score: 13.9 |
| IPR019734 | Tetratricopeptide repeat | PFAM | PF13176 | TPR_7 | coord: 361..392
e-value: 0.016
score: 15.1 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 248..281
score: 7.965 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 208..241
score: 5.753 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 357..390
score: 9.735 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 168..201
score: 10.237 |
| IPR019734 | Tetratricopeptide repeat | PROSITE | PS50005 | TPR | coord: 316..349
score: 5.871 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 521..848
e-value: 5.2E-41
score: 139.8 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 538..601
e-value: 2.0E-12
score: 47.4 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 540..649
score: 37.454 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 533..650 |
| IPR021922 | Par3/HAL, N-terminal | PFAM | PF12053 | DUF3534 | coord: 1051..1121
e-value: 2.6E-6
score: 27.5 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 365..475
e-value: 4.2E-6
score: 26.2 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 221..295
e-value: 1.1E-5
score: 24.8 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 138..283 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 22..126 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 333..445 |
| IPR013026 | Tetratricopeptide repeat-containing domain | PROSITE | PS50293 | TPR_REGION | coord: 168..281
score: 16.469 |
| IPR013026 | Tetratricopeptide repeat-containing domain | PROSITE | PS50293 | TPR_REGION | coord: 316..390
score: 10.675 |
Blast
BLAST of TCONS_00061475-protein vs. Swiss-Prot (Human)
Match: TONSL (Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1 SV=2) HSP 1 Score: 307.76 bits (787), Expect = 8.996e-87 Identity = 205/684 (29.97%), Postives = 347/684 (50.73%), Query Frame = 0
Query: 6 KREIKVLETQKKRALQKEDLTEAAKICNVIGETLSSFGCFDEAIDAHKEEVHLSEAINDVIGVAVGNRKVGECLCELRQFDDAIKHQQKHLKLARSVDNVLEQQRALATLGRTYFVQAEDFDDDPGGTKQCLKKSEKAYFQSLELCNT-LSTSLTPKEFLQMKSRLYLNLGLVYEWKQDYKEALKFVSKALLISKEQKLRENTYRCHYTLSGLYLNAKSYQKALQSAKSAVMIGKEMKSKQQELDAQMQLGVTLLRLGEFSSALQALKQVYKASANENPQSIELIIKNLKFAMKGVKLQTRLDCCTSE--QERMTSYEHFGDLSYDVMCPEKAIEYYQKQLDVARELRIEDKLIAPIYISIAVTYSECKEYGKALEFYQRELKLRKNDLKEKSSTYCAIGKCLEDLERPYPEIKEIYMKAIECAQSSGHIKTILKAYKDWAEVVKVNEGPIMHENVLKKIATLRQEMETEGDDSQEAVSSPLD--------------DDGSDDVHLTPDEVEMLESDDEGNDEEENHLSSTSSTKQRTSRESKKKVKKVNERGETPLHVAAINGNIARVEELLKLGADVKARDYCGWQPIHEASNHGFYDIVKLLLEYGSDVNDPGGAHCGGITPLHDASQNGHLKVVKLLLEYNADVYVKCKEGHTPLQLVQTAIRNDEEELTASDSQNSESL 672
+RE++ L K +A + E A +C+ +GE L+ G + EA++ H +E+ L E +D +G AV +RK+GE L E+ + A++HQ ++L+LA S+ N E QRA AT+GRT+ D D ++ L +++ A+ +SL + + L +L E +M++RLYLNLGL +E Q + K++ ++++ L E+ +R Y L ++ A + +A++ + A M+ + E + + + L LG+F +A +ALK+ Y+ ++ P I +NL+ + V+LQ +L+ Q M E GDL +A E YQKQL A L A I++S+A T + K++ A+ Y+ EL+LR ++ E++ T+ I E+ Y + + KA+ CAQ + + P + VL+ + T++ ++ + E L ++ L EVE+ E +D+ D L + R K + N+ GET LH A I G + RV++L++ G + RDYCGW P+HEA N+G +IV+ LL++G+ V+DPGG C GITPLHDA GH +V +LLLE A V ++ ++G +PL+ +Q ++ +L Q + ++
Sbjct: 4 ERELRQLSKAKAKAQRAGQRREEAALCHQLGELLAGHGRYAEALEQHWQELQLRERADDPLGCAVAHRKIGERLAEMEDYPAALQHQHQYLELAHSLRNHTELQRAWATIGRTHL----DIYDH-CQSRDALLQAQAAFEKSLAIVDEELEGTLAQGELNEMRTRLYLNLGLTFESLQQTALCNDYFRKSIFLAEQNHLYEDLFRARYNLGTIHWRAGQHSQAMRCLEGARECAHTMRKRFMESECCVVIAQVLQDLGDFLAAKRALKKAYRL-GSQKPVQRAAICQNLQHVLAVVRLQQQLEEAEGRDPQGAMVICEQLGDLFSKAGDFPRAAEAYQKQLRFAELLDRPGAERAIIHVSLATTLGDMKDHHGAVRHYEEELRLRSGNVLEEAKTWLNIALSREEAGDAYELLAPCFQKALSCAQQA--------------------QRPQLQRQVLQHLHTVQLRLQPQEAPETETRLRELSVAEDEDEEEEAEEAAATAESEALEAGEVELSEGEDD-TDGLTPQLEEDEELQGHLGRRKGSKWNRRNDMGETLLHRACIEGQLRRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGGQGCEGITPLHDALNCGHFEVAELLLERGASVTLRTRKGLSPLETLQQWVKLYRRDLDLETRQKARAM 660
The following BLAST results are available for this feature:
|
