TCONS_00061184-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061184-protein
Unique NameTCONS_00061184-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061184-protein ID=TCONS_00061184-protein|Name=TCONS_00061184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
MASEEEMMRQMMGFSGFGAAEKPQVKQFEKVSQQRIEEAKRKDDKDEEKT
KNQTDFDVDDDEEVIGPLPPGFGQSGNEEKSKEPKEKGSEEAKQKKDSDE
ESEDDEEENLLQKIPRSHEITLKHGTKVISALALDPSGSRLASGGYNYDV
KFWDFNSMDINLRAFRTIEPFESHWIHSLKYSITGDMLLIGAGNAQPKVL
DRDGHQVYECKKGDQYIVDMRNTKGHISMVRNCCWDPKDRNMFISSGDDG
TVRLWDINTVRKNKEVIVVKDMQRRKTGCTYCTFNHDGKLILAAGQDGSI
QGWDTKKMFVNTSIKIPNAHTKGSETSCLTLAHDNRTLISRGGDDTVKQW
DLRNVKKPVATMDGLTTYYSTTMCSFSPDEKLLLTGTSTKKEGEGSLLFL
ERDTFETVYQVKFGKGVSVVTSLWHPKLNQIVVGLSDGNVRVLFDPTKSR
NGATLCVGKVKHKRVDLGEEMIKPQIVNPHSLRMYREKKIDSVKKMKAKM
RKDPITSHKPEAPMGTGHGAGGRLKEGMSLTGFVVKNIALAKKDDLNPRE
ALLRHAKEAEKNPFWISPAYASTQPKKIFKEESSEEEEEDDMGPLGKRQK
TQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038376XLOC_038376Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061184TCONS_00061184Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 499..520
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 575..602
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 161..201
e-value: 170.0
score: 2.9
coord: 262..304
e-value: 0.17
score: 21.0
coord: 310..351
e-value: 1.8
score: 15.5
coord: 115..154
e-value: 6.1E-4
score: 29.1
coord: 404..444
e-value: 99.0
score: 4.4
coord: 213..256
e-value: 2.1E-5
score: 34.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 124..154
e-value: 0.0069
score: 17.1
coord: 221..256
e-value: 5.6E-5
score: 23.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 223..265
score: 13.082
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 122..163
score: 10.208
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 268..378
e-value: 1.1E-16
score: 60.4
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 19..267
e-value: 7.2E-28
score: 96.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 379..467
e-value: 2.6E-6
score: 26.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 141..155
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 291..305
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 122..360
score: 22.122
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 98..442

Blast
[Close]
BLAST of TCONS_00061184-protein vs. Swiss-Prot (Human)
Match: WDR70 (WD repeat-containing protein 70 OS=Homo sapiens GN=WDR70 PE=1 SV=1)

HSP 1 Score: 509.605 bits (1311), Expect = 2.226e-174
Identity = 259/530 (48.87%), Postives = 352/530 (66.42%), Query Frame = 0 
Query:   61 DEEVIGPLPPGFGQSGNEEKSKEPKEKGSEEAKQKKDSDEESEDDEEENLLQKIPRSHEITLKHGTKVISALALDPSGSRLASGGYNYDVKFWDFNSMDINLRAFRTIEPFESHWIHSLKYSITGDMLLIGAGNAQPKVLDRDGHQVYECKKGDQYIVDMRNTKGHISMVRNCCWDPKDRNMFISSGDDGTVRLWDINTVRKNKEVIVVKDMQRRKTGCTYCTFNHDGKLILAAGQDGSIQGWDTKKMFVNTSIKIPNAHTKGSETSCLTLAHDNRTLISRGGDDTVKQWDLRNVKKPVATMDGLTTYYSTTMCSFSPDEKLLLTGTSTKKE-GEGSLLFLERDTFETVYQVKFGKGVSVVTSLWHPKLNQIVVGLSDGNVRVLFDPTKSRNGATLCVGKVKHKRVDLGEEMIKPQIVNPHSLRMYREKKIDSVKKMKAKMRKDPITSHKPEAPMGTGHGAGGRL-KEGMSLTGFVVKNIALAKKDDLNPREALLRHAKEAEKNPFWISPAYASTQPKKIFKEESSEEEE 588
            +E+++GPLPP   +   E + +E                   E++EEEN + KIP SHEITLKHGTK +SAL LDPSG+RL +GGY+YDVKFWDF  MD + +AFR+++P E H I SL+YS TGDM+L+ +G++Q KV+DRDG +V EC KGDQYIVDM NTKGH +M+    W PK +  F++  +D TVR W++   +K K V   + MQ +K   T CT++ DG LI AA Q+GSIQ WD + + V+       AH  G++TSC+T ++D   L SRGGDD++K WD+R   KP+ +  GL T +  T C FSPD+KL++TGTS ++  G G L+F ER TF+ VY++      SVV  LWHPKLNQI+VG  +G  +V +DP KS+ GA LCV K + K     E + +  I+ PH+L M+RE +  S +K   K R DP+ SHKPE P+  G G GGR+   G +L+ ++VKNIAL K DD NPREA+LRHAK AE +P+W+SPAY+ TQPK +F +  S++EE
Sbjct:  135 EEDILGPLPPPLNEEEEEAEEEE------------------EEEEEEENPVHKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIVDMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDGNLIAAACQNGSIQIWD-RNLTVHPKFHYKQAHDSGTDTSCVTFSYDGNVLASRGGDDSLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSIQRGCGSGKLVFFERRTFQRVYEIDI-TDASVVRCLWHPKLNQIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRK-AKQAETLTQDYIITPHALPMFREPRQRSTRKQLEKDRLDPLKSHKPEPPVA-GPGRGGRVGTHGGTLSSYIVKNIALDKTDDSNPREAILRHAKAAEDSPYWVSPAYSKTQPKTMFAQVESDDEE 642
The following BLAST results are available for this feature:
BLAST of TCONS_00061184-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR702.226e-17448.87WD repeat-containing protein 70 OS=Homo sapiens GN... [more]
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