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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00061170-protein ID=TCONS_00061170-protein|Name=TCONS_00061170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp
MKDSYEQKSFNSYKEPTYDADVTERHNPVRGTRISPAKGSEDEVTLYVSN
IPITLNEDAIRNIFKQYGKVRRVTKCRPKVTNTDTTFGFVSYAHVREASE
AIANLHDFDFGFEKKLRVRLAHGKKEDDGMHFVPHNIDIKLGGDYKPQTE
TINEDSGNDSLVESGNTPPKLSEPIKTNEDTLFKSMFPETTTDKASLHST
NQGFVPDGPRLYIQGISTRLDKDALQRIIGEIAPCKDAILTPPKTHNQYT
TFGFITVGSVKDAETVIDHFNDFGNKIKVSYSNKSAKEYNKPISTSTDDD
FYLNLLKEPSLESAFGEDVVKDPIIESPPAQTAYEPVTITKNKESPLGNI
KGLSALANVLDASRSKPIKENFNTILARTPSPVSEPQYTPLKTAIQVADQ
PVCEPVSVAKNNESPLGNIKGLSALANVLDASRSPPIKENFGKDTILART
PSPISKPQYAPLRTLTQVVDQPFCEPVSVAKNNESPLGNIKGLSTLANVL
DASSSNSTKENLGKDTILTSPVSKPQHNAQEESPITEISSHQQTTTQYAP
LDTKTLEKSLVTKIISPQQEIKASSSPVKAATAHYSGEEAEVSVESLMKI
LAPDILPAKTTDEEKITLETINSDTPNEERPPTPALPSETTFITSEIPSH
IHPLETVSSRIEVQKLHSDSYDALITNVESPSLFYGVLVSKDGTIKTEMM
THDIGATFDRRKDLVFTFQAGCLCTVKIDNTWRRALILKIDERDIDVFLI
DSGKKMTFKKEEIKPLLKEHKVVPAQALPMKLITAVPKDGNYWSEDATKF
LQRILTNCKVRIRPEYKDKMVFGIRLKIGTQSIDKLLEDKGFAKQIMCEL
PQVAHDWKPIQWKEITGKMDIPFEMPDRSEFEIYVSHIKSPSQFFCRLFE
QSKDLKVDEVEQELKDFYENETQPEDLSIHPKMTCAFKLENGKWHRGWIK
TIRDKVKVLAIDYGSNYILPTTSIYPLPEKFKELPAQSISMQLQYVIPIE
GAQHFSQATIERFKLLTFGRVMIVRVRKVHNTIHRVLLFDKKTGCNVGDK
LVEEGYASKIHIPKPGKPTGLPAGSPDKSQTPGGVAQNDGPSFGRGRVLG
RGMALMKDRGLLKP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000504 | RNA recognition motif domain | SMART | SM00360 | rrm1_1 | coord: 210..280
e-value: 7.9E-5
score: 32.0
coord: 45..119
e-value: 2.0E-16
score: 70.6 |
| IPR000504 | RNA recognition motif domain | PFAM | PF00076 | RRM_1 | coord: 46..110
e-value: 5.5E-11
score: 42.0 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 44..123
score: 14.488 |
| IPR000504 | RNA recognition motif domain | PROSITE | PS50102 | RRM | coord: 209..284
score: 9.286 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 205..289 |
| IPR000504 | RNA recognition motif domain | SUPERFAMILY | 54928 | RNA-binding domain, RBD | coord: 27..129 |
| IPR002999 | Tudor domain | SMART | SM00333 | TUDOR_7 | coord: 716..771
e-value: 0.0031
score: 26.8
coord: 927..982
e-value: 1.3
score: 15.6 |
| IPR002999 | Tudor domain | PFAM | PF00567 | TUDOR | coord: 876..994
e-value: 2.4E-20
score: 72.7
coord: 670..782
e-value: 2.8E-15
score: 56.3 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 717..773
score: 9.616 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 928..984
score: 10.462 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 2..129
e-value: 1.2E-18
score: 66.8 |
| None | No IPR available | GENE3D | 2.40.50.90 | | coord: 755..847
e-value: 9.9E-13
score: 47.8
coord: 966..1061
e-value: 6.0E-19
score: 67.8 |
| None | No IPR available | GENE3D | 3.30.70.330 | | coord: 189..295
e-value: 5.7E-8
score: 32.3 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 928..965
e-value: 3.2E-8
score: 32.8
coord: 716..754
e-value: 2.1E-8
score: 33.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 505..527 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1062..1114 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 144..175 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 933..976
e-value: 0.00836362
score: 34.496 |
| None | No IPR available | CDD | cd00590 | RRM_SF | coord: 46..119
e-value: 4.14894E-13
score: 65.4041 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 722..765
e-value: 1.15349E-4
score: 40.274 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 909..996 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 698..782 |
Blast
The following BLAST results are available for this feature:
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