TCONS_00060641-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060641-protein
Unique NameTCONS_00060641-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060641-protein ID=TCONS_00060641-protein|Name=TCONS_00060641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MFVLSEMKDVIRIKPFNFVYNVRESLEFGLNKKFANKVVHNVGLCITLFD
IIEIGDSYILPGDGSSHTPVTFRFIVFRPFIDEVLVGKVKSCTPDGVQVS
LGFFDDITIPKEYLQQKSKFVDTEQLWVWEYETEDGTHDLFMDINEEIRF
RIIDEEFVDLTPEGPAPPPVDGEPAPVVENKRSPYSISASISESGLGLLS
WWS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038137XLOC_038137Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060641TCONS_00060641Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005576RNA_pol_Rpb7_N
IPR004519RNAP_E/RPC8
IPR013238RNA_pol_III_Rbc25
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7, N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 8..77
e-value: 1.8E-15
score: 57.0
IPR005576RNA polymerase Rpb7, N-terminalGENE3D3.30.1490.120coord: 1..81
e-value: 5.1E-25
score: 87.3
IPR005576RNA polymerase Rpb7, N-terminalSUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..78
IPR004519DNA-directed RNA polymerase, subunit E/RPC8TIGRFAMTIGR00448TIGR00448coord: 1..164
e-value: 2.5E-38
score: 129.4
NoneNo IPR availableGENE3D2.40.50.140coord: 83..199
e-value: 4.0E-21
score: 74.5
NoneNo IPR availableCDDcd04330RNAP_III_Rpc25_Ncoord: 2..80
e-value: 1.45596E-36
score: 123.473
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 79..202
e-value: 1.2E-36
score: 125.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 79..198

Blast
[Close]
BLAST of TCONS_00060641-protein vs. Swiss-Prot (Human)
Match: RPC8 (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.120e-87
Identity = 122/205 (59.51%), Postives = 152/205 (74.15%), Query Frame = 0 
Query:    1 MFVLSEMKDVIRIKPFNFVYNVRESLEFGLNKKFANKVVHNVGLCITLFDIIEIGDSYILPGDGSSHTPVTFRFIVFRPFIDEVLVGKVKSCTPDGVQVSLGFFDDITIPKEYLQQKSKFVDTEQLWVWEYETEDGTHDLFMDINEEIRFRIIDEEFVDLTPEGP--APPPVDGEPAPVVENKRSPYSISASISESGLGLLSWWS 203
            MFVL EM D +RI P+ F   + +S+   LNKK ANKVV+NVGLCI LFDI ++ D+Y+ PGDG+SHT V FR +VF PF+DE+L+GK+K C+P+GV VSLGFFDDI IP E LQQ +KF + EQ+WVWEYETE+G HDL+MD  EEIRFR++DE FVD +P GP  A      E  P    K +PY++  SISE GLGLLSWW+
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELP---KKEAPYTLVGSISEPGLGLLSWWT 202
The following BLAST results are available for this feature:
BLAST of TCONS_00060641-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC81.120e-8759.51DNA-directed RNA polymerase III subunit RPC8 OS=Ho... [more]
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