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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00060594-protein ID=TCONS_00060594-protein|Name=TCONS_00060594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
QTSKGFGLTYPPRRTSRIGTTSRNDSHRFIEPLSSYSPTTSGSMAGYLTR
RRTPHHSVSKSDTYQFSLDGDEDFKTPSCSYSAHSESDSRFSSERGSISE
DTASTSMKSFLNDRVLPPMNLISDKQQQKQEERTSTSSDNSRNLRPFSCH
VCSFRACEKYNLLRHYDNRHSLRKRDVNIVYPCPVCQRTFKGKTYLITHL
ETHAESISKPYRCSICQASYDNVTDLERHHLSHEFDLTTDPGEEDQDDGK
PKERTSLLQCQKCSLGFDSLESLQRHQRRHIETIGTGTSAVTTVATSTNQ
AFTFKPPTKKPKKNGNIKGLKRKPIKENKAERKHDKAKFRKRLTTGPEFL
NCPYCSSQFSNKNFNGITNLNIHLLLKHKNTIKAKPRTHLHKCPKCVKLF
TSQTSLDVHLQKKHGIESDESAQGKQKSPRKRKEISESEVKQDLGEEHQS
AVSTNIIKGESVNKSTVNSNNKTDRKARLRKRLAKKRSQLKSKIIVTRTR
SQSPVKAASSSSNGDDVPKTSKFNKRRDGGASNTSQSGSVFRRKGRPPGI
GKVIAGRILKKYRCPHCHLTYIHQPSFINHQRTCKSLKATALQLTNKRLM
KS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 211..233
e-value: 0.01
score: 25.0
coord: 562..582
e-value: 23.0
score: 10.1
coord: 258..280
e-value: 0.0063
score: 25.7
coord: 350..378
e-value: 11.0
score: 12.7
coord: 181..203
e-value: 0.0011
score: 28.3
coord: 391..414
e-value: 0.012
score: 24.9
coord: 147..170
e-value: 1.7
score: 17.6 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 213..233 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 260..280 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 393..414 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 183..203 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 211..233
score: 8.891 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 258..280
score: 9.577 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 391..419
score: 9.723 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 181..208
score: 10.45 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 180..233 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 258..280
coord: 386..410 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 571..601
e-value: 0.11
score: 12.2 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 259..280
e-value: 0.0039
score: 17.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 223..267
e-value: 2.6E-8
score: 33.6
coord: 158..191
e-value: 7.3E-8
score: 32.1
coord: 402..570
e-value: 3.1E-8
score: 33.4
coord: 362..401
e-value: 2.4E-5
score: 24.1 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 192..222
e-value: 1.3E-10
score: 40.7 |
| None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 181..203
e-value: 5.3E-4
score: 20.5 |
| None | No IPR available | GENE3D | 2.20.28.10 | | coord: 268..361
e-value: 7.8E-4
score: 19.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 78..105 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 414..549 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..46 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 48..157
e-value: 0.11
score: 12.3 |
Blast
The following BLAST results are available for this feature:
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