TCONS_00060527-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060527-protein
Unique NameTCONS_00060527-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060527-protein ID=TCONS_00060527-protein|Name=TCONS_00060527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp
MNSKKQIRIPSGKSGRSQEDEKSTKKPVSTKSKTGNASSIKRPGQTKASL
RRQEIALSKKLEHTSLVPNEALHCIFKYLTFSDLLRCNCVCKAWKDVAEI
QSLWHKVFRFLPKPCQELSTKAKTTGCKDWKKEALFCVKERRQNYYKKLM
SSNQLHSRKKKRAEATRTLGTRWLLEIQEKGPSKPHQYFADEDFIFSFHN
LTARWNNMNDVPSLSKVKSISLYAVTPLLFDENMKPIENSICTRSLLASH
RFRDHPLKSMKLVHQDKELTFYSLNQTLYFAVWSSSLPKDGDIAFVGMTT
TIENLLLKTQEGSSNRVWSAPPHQVIPDDVNPSYGLHGYSVRICLRNSRK
TFYENEYSFHKNGRWEDDWLSFIHQTIENPLYDDFYYDIKEQIKFSWKSG
PINGRIDNLMILDVQLKDMNEELIWDSSELVLMKETEEDTDFSNYIVYEM
TTEESHRKTLIRVLQDPSSKESLILSLKIFLRKSVINEWFGTKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038071XLOC_038071Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060527TCONS_00060527Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 67..107
e-value: 1.7E-6
score: 37.6
IPR001810F-box domainPFAMPF12937F-box-likecoord: 67..108
e-value: 1.7E-12
score: 46.9
IPR001810F-box domainPROSITEPS50181FBOXcoord: 61..107
score: 11.458
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 65..120
NoneNo IPR availableGENE3D1.20.1280.50coord: 62..180
e-value: 1.9E-12
score: 47.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Blast
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BLAST of TCONS_00060527-protein vs. Swiss-Prot (Human)
Match: FBX15 (F-box only protein 15 OS=Homo sapiens GN=FBXO15 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.508e-28
Identity = 105/459 (22.88%), Postives = 200/459 (43.57%), Query Frame = 0 
Query:   67 VPNEALHCIFKYLTFSDLLRCNCVCKAWKDVAEIQSLWHKVFRFLPKPCQELSTKAKTTGCKDWK---------KEALFCVKERRQNYYKKLMSSNQLHSRKKKRA-----------------EATRTLGTRWLLEIQEKGPSKPHQYFADE-DFIFSFHNLTARWNNMNDVPSLSKVKSISLYAVTPLLFDENMKPIENSICTRSLLASHRFRDHPLKSMKLVHQDKELTFYSLNQTLYFAVWSSSLPKDGDIAFVGMTTTIENLLLKTQEGSSNRVWSAPPHQVIPDDVNPSYGLHGYSVRICLRNSRKTFYENEYS--FHKNGRWEDDWLSFIHQTIENPLYDDFYYDIKEQIKFSWKSGPINGRIDNLMILDVQLKDMNEELIWDSSELVLMKETEEDTDFSNYI--VYEMTTEESHRKTLIRVLQDPSSKESLILSLKIFLRKSVINEWFGTKY 494
            +P+E L  IF YL    LL   CV + +  +A    +W  ++     P +            +WK           +   V+++   Y+KK   + Q+ S K   A                 EA R  G  W + ++EKG     +Y  +  D   +  ++T  W      P L+ + ++ L  +TP+  D    P ++ +   SL+A +      + +M  +  D+ +  + L+  L   VW     K+ ++AFV       +L+ ++  GS+   +  PPH    DD +P YGLHGY + + L +    +    +   F K G  E+  +  I   ++N   +  +  +  ++  SWK+   +G I +  ++DV L D + +  W  S  V ++     +D S+++   Y +   ++  +  + ++    ++E LI++L ++L  + IN WFGT+Y
Sbjct:   77 MPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIWIGIYSTAFSPARS-----------NWKFNSVEKIAMSMSFLSVQDKEAGYWKKEYITKQIASVKAALADILKPVNPYTGLPVKTKEALRIFGLGWAIILKEKGGK---EYIMEHVDLSINDTSVTVIWYG-KKWPCLASLSTLDLCGMTPVFTDWYKTPTKHRLRWHSLIAKYNLSHLTISTM--IGCDRLIRIFCLHPGLLVGVWK----KEEELAFVMANLHFHHLVERSTLGSATIPYELPPHSPFLDD-SPEYGLHGYQLHVDLHSGGVFYLCGTFRNLFTKRGNIENGHVKLIVIHLKN---NREHLPLIGKVGLSWKTDIFDGCIKSCSMMDVTLLDEHGKPFWCFSSPVCLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEYLIVNLVLYLSIAKINHWFGTEY 510
The following BLAST results are available for this feature:
BLAST of TCONS_00060527-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX151.508e-2822.88F-box only protein 15 OS=Homo sapiens GN=FBXO15 PE... [more]
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