TCONS_00060522-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060522-protein
Unique NameTCONS_00060522-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length180

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060522-protein ID=TCONS_00060522-protein|Name=TCONS_00060522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MTSTFQWPWQYNFPPFFTIQPNNATQAKQIEAWRALILSYYKHNKEYRLD
VTEAHNSVLFTNESIKRKLAMEDIVMVLDTLAKTGHVEWDNDKEKQRCFV
MWRTPDEWGEQIYKWIGDNGMLDTVCTLYELHSGDDTTNEEFHGIDINVL
LKALEALERRGKAQVFTAQDPSEVGVKFFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038069XLOC_038069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060522TCONS_00060522Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014041ESCRT-II_cplx_Vps25-sub_N
IPR008570ESCRT-II_cplx_vps25-sub
IPR011991WHTH_DNA-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014041ESCRT-II complex, Vps25 subunit, N-terminal winged helixGENE3D1.10.10.570coord: 1..101
e-value: 7.7E-36
score: 122.1
IPR008570ESCRT-II complex, vps25 subunitPFAMPF05871ESCRT-IIcoord: 10..146
e-value: 1.4E-52
score: 177.5
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 102..179
e-value: 2.1E-29
score: 100.9
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 5..108
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 103..178

Blast
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BLAST of TCONS_00060522-protein vs. Swiss-Prot (Human)
Match: VPS25 (Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens GN=VPS25 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.162e-60
Identity = 88/179 (49.16%), Postives = 125/179 (69.83%), Query Frame = 0 
Query:    1 MTSTFQWPWQYNFPPFFTIQPNNATQAKQIEAWRALILSYYKHNKEYRLDVTEAHNSVLFTNESIKRKLAMEDIVMVLDTLAKTGHVEWDNDKEKQRCFVMWRTPDEWGEQIYKWIGDNGMLDTVCTLYELHSGDDTTNEEFHGIDINVLLKALEALERRGKAQVFTAQDPSEVGVKFF 179
            M  +F+WPWQY FPPFFT+QPN  T+ KQ+ AW +L+LS+ + +K+  + V EA  S LF N  ++RKL +E I +VL+ L K G++EW  DK K    +MWR P+EWG+ IY+W+  +G  ++V TLYEL +G+DT +EEFHG+D   LL+AL+AL++  KA++ T  D    GVKFF
Sbjct:    1 MAMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEW-LDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVSDGR--GVKFF 176
The following BLAST results are available for this feature:
BLAST of TCONS_00060522-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS252.162e-6049.16Vacuolar protein-sorting-associated protein 25 OS=... [more]
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