TCONS_00059673-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059673-protein
Unique NameTCONS_00059673-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059673-protein ID=TCONS_00059673-protein|Name=TCONS_00059673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp
DYDDDIMGTYQFDTTDFDGRKDESDHEETGDEDGKQKDDEEKDDEEKKKK
LAKQNNKVEPVSKETPTGASDFESQDSQEVPYKYKTSSRIIESFQSFGTP
ASAINSSDALSSQGGSHQKTESTMPKMVVSDSEGEDDLEPTQAYNMPSPQ
KDPAKDKDGFVVPSMPPAQGLRGSLPGASTIEPKDVYDAVDAGTQMTASS
SSDDEVIIRNRKTKKIIHESDDEETQAYGVENTQAYAGESTQAYATESTQ
AYAGEATQAYAGASTQAYAGEATQAYTTESTQAYAAESTQAYAAESTQAY
AAENTQAYAGASTQAYGEATQAYGYDGEATQVYIGEAYGDATQAYVGDDL
PTNEAMEQKDDYSDATLSEVDEDEAEQQKQLIGDAKQPNEQEQHVEPESM
NTKPQKQESQNSTSTAGSQKSESQASTKSKEDSEDTRPKRKGRPRKKDSL
DSNDTKPKKTTSRRVTTNKRMKTTQSIIELSEEHSPHTNEPSNTENPETN
DLELDGNVGLVNSEESVPPKRGRGRRKTGKANAAQKTIPELLNAGVNKEK
GDLKANSDETTKKTVNKRGKNKQSAATNETKTTENSPENNATNSKRRKAK
KSSQEQVLQEEQAKEIEEVPSETKTNIADEPVKASKTGRRRTNKGSQSLK
EEPVAENSPESIEEPKKTKRGRPKKGSQEPVVELAPINAKPDIKAKRGGK
KANDVETSIENKDTIESDPLTSNAGTNAKTTRKGRKGKCDFENNTEHVEP
VVTVTETKPSRKRGSISQKNVREVESLESKEVPTEQGIEISADNSPSVEE
HSKPKRGRKAKVSIAQPEVPEEPPQNSSTPDIQTPLPVTGKRSRKQKVWY
GRTSIEPSKEDDTKSLDSAATGGTKAKRGRKSKASTQETTEEITAAPTPS
SVSKGKQKKEKPRPPKEKSPPPKEKSSPPPPKGDTGGETSQDELNTSQLS
TASSSSIRRSTLSASKPKVVFTGISDNSVEKIVSSLGGSTVEHVDKASHL
VTDKVRRTVKFMCALAKGIPILTPEWLKASKSNNSFVDCQEHILKDEAAE
KQYGFSLQESLVKSRSQPLLENKKIHITKSVKPEPKHMKEMVECCGGQYI
TKSTKLADDVIVISCDEDAKDHGKFAKNVICSNELLLTGILKQQLDVEQY
RLNAGQQPSTANDGKRKRASVATASNGKKSKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037550XLOC_037550Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059673TCONS_00059673Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1155..1183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..964
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 962..1034
e-value: 2.1E-5
score: 33.9
coord: 1067..1143
e-value: 4.8
score: 15.6
IPR001357BRCT domainPFAMPF16770RTT107_BRCT_5coord: 958..1043
e-value: 7.6E-11
score: 41.7
IPR001357BRCT domainGENE3D3.40.50.10190coord: 1066..1157
e-value: 8.0E-22
score: 76.7
IPR001357BRCT domainGENE3D3.40.50.10190coord: 958..1065
e-value: 1.9E-26
score: 91.7
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 966..1044
score: 13.673
IPR001357BRCT domainCDDcd00027BRCTcoord: 966..1030
e-value: 1.64242E-8
score: 51.9387
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 971..1061

Blast
[Close]
BLAST of TCONS_00059673-protein vs. Swiss-Prot (Human)
Match: MDC1 (Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 9.263e-47
Identity = 88/213 (41.31%), Postives = 132/213 (61.97%), Query Frame = 0 
Query:  954 SSSIRRSTLS--ASKPKVVFTGISDNSVEKIVSSLGGSTVEHVDKASHLVTDKVRRTVKFMCALAKGIPILTPEWLKASKSNNSFVDCQEHILKDEAAEKQYGFSLQESLVKSRSQPLLENKKIHITKSVKPEPKHMKEMVECCGGQYITKSTK-LADDVIVISCDEDAKDHGKFAKNV---ICSNELLLTGILKQQLDVEQYRLNAGQQPST 1160
            S S+RR+ L+  ++ PKV+FTG+ D   E+ V +LGGS      +ASHLVTD++RRTVKF+CAL +GIPIL+ +WL  S+    F+   E+++ D   EK +GFSLQ++L ++R + LLE  +I++T  V+P P  M E++ CCGG Y+    +      +VI+C +D   H      V   + S E LLTG+LKQ+   E + L+  +  ST
Sbjct: 1878 SRSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFP-HCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLEMSST 2089
The following BLAST results are available for this feature:
BLAST of TCONS_00059673-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDC19.263e-4741.31Mediator of DNA damage checkpoint protein 1 OS=Hom... [more]
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