TCONS_00059670-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059670-protein
Unique NameTCONS_00059670-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059670-protein ID=TCONS_00059670-protein|Name=TCONS_00059670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
MEVEEHHPKPRRRMKQVLNDIKETVEFYFSDANLRRDRFFRKEIDQSEDG
YVDFKTILNCNKVKSLEVDEQTLTKALENSKVLELNEEKTKVKRCTTIPE
LNSEEADSRIIYVERLYAFVDHDWLKKVFSICGKIQYISLPRYKHDNKIK
GFAFIEFATAEEAERACKVLNSVEKKSPKQEESSSPMKGHRKRKRSTSFC
ESESDAKKVLPEATLRRRRTVSECSNEAVSPAKTKKKRKSSLEDRSLSDL
KGQIENNKSETGDKDNNRDKEATTESSTEPTEANTDNENVEVTNNTDADS
SQKKKKNRKHTKKDKEVKEVVVPPLYVISKAEWLSFKRQYKHLQRGEFQK
LKRTTKILKSELVRRKELKEKFSSGQSSKTENIEKKSQQNTAQGQIIATN
NDNKIGQKRKHKDEPLVEIKENSKEQKAANAEPSEKKTKNSSYELEPGSV
IKVATSMESLTRDVIKTTLSPYGEIAYVDYINGALKGYVRFKSAESRKEV
EETAKNKQDGWQFKIEDLKEGEEEAYFKKALEERAKRYELNEKKKQKRQQ
RGTMKVLKQAEDMAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037548XLOC_037548Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059670TCONS_00059670Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR000504RRM_dom
IPR006630La_HTH
IPR014886La_RRM
IPR011991WHTH_DNA-bd_dom
IPR034887LARP7_RRM1
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 528..560
NoneNo IPR availableGENE3D3.30.70.330coord: 422..559
e-value: 5.8E-5
score: 22.6
NoneNo IPR availableGENE3D3.30.70.330coord: 101..245
e-value: 6.5E-16
score: 57.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 369..443
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 540..565
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..318
NoneNo IPR availableCDDcd07323LAMcoord: 18..94
e-value: 3.77748E-23
score: 92.5949
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 149..167
score: 33.01
coord: 50..65
score: 27.27
coord: 24..41
score: 53.54
coord: 81..94
score: 39.61
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 110..181
e-value: 6.7E-8
score: 42.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 111..172
e-value: 1.2E-11
score: 44.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 109..185
score: 11.895
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 107..188
coord: 446..504
IPR006630La-type HTH domainSMARTSM00715lacoord: 15..95
e-value: 4.0E-19
score: 79.6
IPR006630La-type HTH domainPFAMPF05383Lacoord: 21..78
e-value: 2.8E-18
score: 65.6
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 11..102
score: 22.333
IPR014886La protein, RNA-binding domainPFAMPF08777RRM_3coord: 448..545
e-value: 1.7E-14
score: 53.6
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 4..100
e-value: 2.6E-24
score: 84.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 13..103
IPR034887LARP7, RNA recognition motif 1CDDcd12290RRM1_LARP7coord: 111..172
e-value: 4.09673E-26
score: 101.283

Blast
[Close]
BLAST of TCONS_00059670-protein vs. Swiss-Prot (Human)
Match: LARP7 (La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.719e-57
Identity = 176/593 (29.68%), Postives = 300/593 (50.59%), Query Frame = 0 
Query:   11 RRRMKQVLNDIKETVEFYFSDANLRRDRFFRKEIDQSEDGYVDFKTILNCNKVKSLEVDEQTLTKALENSKVLELNEEKTKVKRCTTIPELNSEEADSRIIYVERLYAFVDHDWLKKVFSICGKIQYISLPRYKHDNKIKGFAFIEFATAEEAERACKVLNSVEKKSPKQEE------SSSPMKGHR--------KRKRSTSFCESESDAKKVLPEAT------LRRRRTVSECSN-EAVSPAK---TKKKRKSSLEDRSLSDLK-GQIENNKSETGDKDNNRD---KEATTESSTEPTEANTDNENVEVTNNTDADSSQKKKKN--------RKHTKKDKEVKEVVVPPLYVISKAEWLSFKRQYKHLQRGEFQKLKRTTKILKSELVRRKELKEKFSSGQSSKTENIEKKSQQNTAQGQIIATNNDNKIGQKRKHKDEPLVEIKENSKEQKAANAEP--SEKKTKNSSYELEPGSVIKVATSMESLTRDVIKTTLSPYGEIAYVDYINGALKGYVRFKSAESRKEV--EETAKNKQDGWQFKIEDLKEGEEEAYFKKALEERAKRYELNEKKKQKRQQRGTMKVLKQAEDM 563
            R R+KQVL DI + V+F+F DANL +DRF R++I++S DGYVD   +++ NK+K L  D + + +AL +S V+EL+ E T+++R   + E   +E D R +YVE L   V+H W+++VF  CG + YIS+P YK     KGFAF+EF T E+A +A + LN+  +++P++         + P+   R        K+K+     E    AK+   + +      ++R R  SE S+ E+  P K    KKK++  +E  SL +++ G+ + + SE  +    R    K    +   E +EA+ +N ++E++   + D+   K  +        +K  K+  ++ E V+ PL V+SK+EW+  K++Y  LQ+     LK+T   +KSE                         S+  T          D+ + Q    K+E            K AN E   +++K   +  +   G ++K+ ++     R  ++ TL+   E+ YVD + G  + + RFK+ E  + V    T  NK+  W  K+E L    E+ Y++K L +R  +  LN+ +++K   RGT K++ +AE +
Sbjct:   28 RSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLKDSSLLKTKRKHKKKHKERHKMGEEVI-PLRVLSKSEWMDLKKEYLALQKASMASLKKTISQIKSE-------------------------SEMET----------DSGVPQNTGMKNE------------KTANREECRTQEKVNATGPQFVSGVIVKIISTEPLPGRKQVRDTLAAISEVLYVDLLEGDTECHARFKTPEDAQAVINAYTEINKKHCW--KLEILSGDHEQRYWQKILVDRQAK--LNQPREKK---RGTEKLITKAEKI 564
The following BLAST results are available for this feature:
BLAST of TCONS_00059670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LARP76.719e-5729.68La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1... [more]
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