TCONS_00059415-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059415-protein
Unique Name	TCONS_00059415-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	288

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059415-protein ID=TCONS_00059415-protein|Name=TCONS_00059415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MQKAFKSTVHSDQQVISRKTMPEAMQEAYNSCDAVPNLERLTKFRHDGKD
SLKFYTDPDYFFELWKEKIIAESNEKRRRKKKRDNRGKRRDMNEKKQVKG
VKKKQVAKNIPDWEIQKKDTGGGGADPLPPHETSPAHSVQSYDSTHLSPS
RRQSTKRGSNASSIGGPPPPPPPPVVGGPPPPPPPSAGGLPPPPPSAAAG
GFSANILQSVKLSAPKPAPEPEPDSRDGLLAAIRTGMNLRKTQHETKQEK
KEANMGNDVASILARRIAVEFSDSEDDSDYSDDDWSDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037402	XLOC_037402	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059415	TCONS_00059415	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003124	WH2_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003779	actin binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003779	actin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003124	WH2 domain	PFAM	PF02205	WH2	coord: 223..244 e-value: 6.3E-5 score: 22.6
IPR003124	WH2 domain	PROSITE	PS51082	WH2	coord: 225..242 score: 9.142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..288

Blast

[Close]

BLAST of TCONS_00059415-protein vs. Swiss-Prot (Human)
Match: WASF3 (Wiskott-Aldrich syndrome protein family member 3 OS=Homo sapiens GN=WASF3 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.711e-23
Identity = 75/212 (35.38%), Postives = 106/212 (50.00%), Query Frame = 0

Query:    1 MQKAFKSTVHSDQQVISRKTMPEAMQEAYNSCDAVPNLERLTKFRHDGKDSLKFYTDPDYFFELWKEKIIAESNEKRRRKKKRDNRGKRRDMNEKKQVKGVKKKQVAKNIPDWEIQKKDTGGGGADPLPPHETSPAHSVQSYDSTHLSPSRRQSTKRGSNASSIGGP-----PPPPPPPVVGGPPPP--PPPSAGGLPPPPPSAAAGGFSAN 205
            M+KAFKS+   DQQV+S+ ++P  + + YN  D  P L  LT +R D KD LKFYTDP YFF+LWKEK++ ++ +K  RK+KR  + ++R     ++VK V+K +  +   +W +   D      + L     S  H   S  S  LSP  R      ++ S    P     P P  P    G  PP  P   A      PPSA+A   + N
Sbjct:   97 MKKAFKSSTVQDQQVVSKNSIPNPVADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDK--RKEKRRQKEQKRIDGTTREVKKVRKARNRRQ--EWNMMAYDKELRPDNRL---SQSVYHGASSEGS--LSPDTRSHASDVTDYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQAAEHEYRPPSASARHMALN 299

The following BLAST results are available for this feature:

BLAST of TCONS_00059415-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059415-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WASF3	2.711e-23	35.38	Wiskott-Aldrich syndrome protein family member 3 O...	[more]

You are here

TCONS_00059415-protein (polypeptide) - C. hemisphaerica