TCONS_00059253-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059253-protein
Unique Name	TCONS_00059253-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	350

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059253-protein ID=TCONS_00059253-protein|Name=TCONS_00059253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
NDLYQHFQNNNIESHMYASQWFLTLFTAKFPLSLVFNIIDIIFCEDLDSI
FQIAAALLKTARKDLLQLDFEGILKYFRINMPKYYMLEPHRKDLVKTIYD
IKISKKKVTKYKQEYVQMKEEQELKEDPVERLKRENGELQMEKLRLEREN
DSLAYEVVTTQVSMQEIITDREEKLNEMIKETEQLRNHLTDAEEEAERLK
VEEARVKDMWRDSMRQADENKAKLNRIIDDYKQILARLEERNEKLKRDFT
AETELLKKQLSTCENCTNALMKNIYPDEDDKGGPREPTITKLLSKEDHEE
QMRSLEEELIKTKVALAEEKNRADEIEMKLHNLMSANEKPWYKKVTVIKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037310	XLOC_037310	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059253	TCONS_00059253	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 214..255
None	No IPR available	COILS	Coil	Coil	coord: 129..149
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	COILS	Coil	Coil	coord: 168..209
None	No IPR available	COILS	Coil	Coil	coord: 295..336
None	No IPR available	GENE3D	1.20.5.340		coord: 288..339 e-value: 0.24 score: 10.7 coord: 94..274 e-value: 0.048 score: 12.9
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 2..66 e-value: 1.4E-15 score: 57.4
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 1..46 score: 13.293
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 2..103

Blast

[Close]

BLAST of TCONS_00059253-protein vs. Swiss-Prot (Human)
Match: RBGP1 (Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.514e-68
Identity = 147/354 (41.53%), Postives = 225/354 (63.56%), Query Frame = 0

Query:    2 DLYQHFQNNNIESHMYASQWFLTLFTAKFPLSLVFNIIDIIFCEDLDSIFQIAAALLKTARKDLLQLDFEGILKYFRINMPKYYMLEPHRKDLVKTIYDIKISKKKVTKYKQEYVQMKEEQELKEDPVERLKRENGELQMEKLRLERENDSLAYEVVTTQVSMQEIITDREEKLNEMIKETEQLRNHLTDAEEEAERLKVEEARVKDMWRDSMRQADENKAKLNRIIDDYKQILARLEERNEKLKRDFTAETELLKKQLSTCENCTNALMKNIYPDEDDKGGPREPTITKLLSKEDHEE-------QMRSLEEELIKTKVALAEEKNRADEIEMKLH---NLMSANEKPWYKKV 345
            DLY HF + ++E+HMYASQWFLTLFTAKFPL +VF+IID++ CE +  IF +A  LLKT++ DLL  DFEG LK+FR+ +PK Y  E + K L++   ++KIS+KK+ KY++EY  M+E+Q  +EDP+ER +REN  LQ   +RLE+END LA+E+VT+++++++ + + EEK + + KE    +  L DAEEE  RL+ E A++K+M R  + +A+    K + II DYKQI ++L ER EK +     E E +++++  CE C     K        +G  +  + TK +  ED +E       Q+R +E EL +TK+ L E + +  ++E  L    N + A +K W+ + 
Sbjct:  708 DLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFERENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESAQLKEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERCREFFNK--------EGRVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALNEVQAAKKTWFNRT 1053

The following BLAST results are available for this feature:

BLAST of TCONS_00059253-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBGP1	7.514e-68	41.53	Rab GTPase-activating protein 1 OS=Homo sapiens GN...	[more]

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TCONS_00059253-protein (polypeptide) - C. hemisphaerica