TCONS_00059128-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059128-protein
Unique NameTCONS_00059128-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059128-protein ID=TCONS_00059128-protein|Name=TCONS_00059128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MADSDSDGRSSDLEDSMQDEGSSSQKNPYSPRYVNIKKGPRGFGFNVRGQ
VAEGGQLRSINGVLYPPLQMISAVLEKGPADVAGVRVGDRILMVNDQNCE
GADHRTVVDLIRQGENELSMAIISVTPSEARKLDGPTNMFGASDYIDYSD
RRSIPISIPDYKHEEKGSDKFVVYNIYISGNLVTSKRYNEFHSLNNELKR
QFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037241XLOC_037241Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059128TCONS_00059128Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR001683Phox
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0035091phosphatidylinositol binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0035091 phosphatidylinositol binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 41..126
e-value: 1.3E-14
score: 64.5
IPR001478PDZ domainPFAMPF00595PDZcoord: 35..122
e-value: 1.6E-11
score: 44.3
IPR001478PDZ domainPROSITEPS50106PDZcoord: 33..126
score: 14.797
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 22..124
IPR001683Phox homologous domainPFAMPF00787PXcoord: 156..235
e-value: 7.0E-13
score: 48.5
IPR001683Phox homologous domainGENE3D3.30.1520.10coord: 146..236
e-value: 9.8E-19
score: 67.0
IPR001683Phox homologous domainPROSITEPS50195PXcoord: 152..237
score: 11.587
IPR001683Phox homologous domainSUPERFAMILY64268PX domaincoord: 138..235
NoneNo IPR availableGENE3D2.30.42.10coord: 2..132
e-value: 2.6E-19
score: 68.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 31..120
e-value: 9.65701E-19
score: 76.8366

Blast
[Close]
BLAST of TCONS_00059128-protein vs. Swiss-Prot (Human)
Match: SNX27 (Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 1.372e-80
Identity = 124/206 (60.19%), Postives = 150/206 (72.82%), Query Frame = 0 
Query:   31 PRYVNIKKGPRGFGFNVRGQVAEGGQLRSINGVLYPPLQMISAVLEKGPADVAGVRVGDRILMVNDQNCEGADHRTVVDLIRQGENELSMAIISVTPSEARKLDGPTNMFGASDYIDYSDRRSIPISIPDYKHEEKGSDKFVVYNIYISGNLVTSKRYNEFHSLNNELKRQFHDFPFPKFPGKWPLKLSEVQLDARRRHLETYLEE 236
            PR V I K   G+GFNVRGQV+EGGQLRSING LY PLQ +SAVL  G AD AGVR GDRIL VN  N EGA H+ VVDLIR GE EL + ++SV P EA  LD   +  G S Y DY++++++PIS+P YKH E+  +KFVVYN+Y++G  + SKRY EF  L+  LKR+F +F FP+ PGKWP  LSE QLDARRR LE YLE+
Sbjct:   41 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFY-DYTEKQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEK 245
The following BLAST results are available for this feature:
BLAST of TCONS_00059128-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX271.372e-8060.19Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=... [more]
back to top