TCONS_00058955-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058955-protein
Unique NameTCONS_00058955-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058955-protein ID=TCONS_00058955-protein|Name=TCONS_00058955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp
DMPMMPMNTPMMPPTIPPVQQPMIPADMGGGGPSSDIKTEKDTTKPKKMK
KRKKAKKAWTEHTAPDGRTYYFNSETKTSLWTKPEDLKTEIEKQIDNCPW
KEYKSDTGRAYFHNEETKESKWTVPEELQNLKDKLEEEEKMIAEKPASSS
EEEVTDDEASESEEKPSQDESEDEEKEEEVKMKEEQPRVEWNTKEEAKQA
FKDLLREKNVPSTATWEQATKLIVHDYRFEALPKVNEKKQVFNTYKQQKS
NQEKEQEREKMKENREKLQVYLEEHPRMHSHVRYRKACEMFENDKQWNSV
AERDRKDLFDDVLFFLAKKEKEDEKKLHMYNKQYMMETFAKMPGLSYRTL
WSEAQEMLKDNSVYKSDDKIQEIMMEEKGDALAAFAEFIRELERDFEEER
IHEKNRLKRQHRKFREGFCALLDDLHKHGYINSLSRWMDLFPKISKDDRF
DNMLGIPGSTPLDLFKFFVEDLKSRYSDEKRIVKDILKDKQFTVEIKTSF
DEFSDVVLADERSHTLDAGNIKSTFNSMREKAESREKDRARKEEREVRRK
ESSFRSMLKQAAPPIEPSDQWDDVRERFEKEDAFQSIAMESERNRLFNEW
NEQNKSKKRKDKKKHKKRSGSDTEEEEDTRESRKKRKYRARSRSRSKSPI
SEDEESDDHEEKKKKKKKKSKKRRQKNSSGSEAESETDARSKKKNKKDRK
REMISPEDEAGESAGNEDKEKEDPSGSPPHKKSKKEKHKEKDRDDEDDDS
DEGNQSESETELQTRRKELLRKLRASAAAAEDDSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037138XLOC_037138Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058955TCONS_00058955Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002713FF_domain
IPR001202WW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 235..274
NoneNo IPR availableGENE3D2.20.70.10coord: 6..70
e-value: 4.1E-11
score: 41.8
NoneNo IPR availableGENE3D2.20.70.10coord: 71..94
e-value: 4.8E-5
score: 22.4
NoneNo IPR availableGENE3D1.10.10.440coord: 542..616
e-value: 5.0E-10
score: 39.2
coord: 258..328
e-value: 3.6E-9
score: 36.4
coord: 404..482
e-value: 4.8E-15
score: 55.2
NoneNo IPR availableGENE3D2.20.70.10coord: 99..178
e-value: 4.9E-7
score: 28.9
NoneNo IPR availableGENE3D1.10.10.440coord: 334..395
e-value: 2.3E-6
score: 27.2
NoneNo IPR availableGENE3D1.10.10.440coord: 483..541
e-value: 0.1
score: 12.2
coord: 189..257
e-value: 5.0E-15
score: 54.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..785
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableCDDcd00201WWcoord: 59..86
e-value: 5.66217E-8
score: 49.0634
NoneNo IPR availableCDDcd00201WWcoord: 97..127
e-value: 2.22414E-5
score: 41.7446
IPR002713FF domainSMARTSM00441FF_2coord: 194..248
e-value: 2.1E-11
score: 53.9
coord: 547..603
e-value: 3.6E-7
score: 39.8
coord: 411..471
e-value: 2.9
score: 14.3
coord: 328..391
e-value: 4.0
score: 13.0
coord: 261..318
e-value: 14.0
score: 7.7
IPR002713FF domainPFAMPF01846FFcoord: 550..600
e-value: 4.5E-6
score: 26.7
coord: 196..245
e-value: 7.4E-12
score: 45.2
coord: 413..467
e-value: 7.6E-8
score: 32.3
IPR002713FF domainPROSITEPS51676FFcoord: 545..603
score: 9.789
IPR002713FF domainPROSITEPS51676FFcoord: 410..471
score: 9.807
IPR002713FF domainPROSITEPS51676FFcoord: 316..391
score: 6.81
IPR002713FF domainPROSITEPS51676FFcoord: 194..248
score: 11.583
IPR002713FF domainPROSITEPS51676FFcoord: 258..315
score: 10.975
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 548..608
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 403..477
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 253..322
IPR002713FF domainSUPERFAMILY81698FF domaincoord: 187..248
IPR001202WW domainSMARTSM00456ww_5coord: 95..127
e-value: 3.1E-5
score: 33.4
coord: 54..86
e-value: 9.3E-9
score: 45.1
IPR001202WW domainPFAMPF00397WWcoord: 98..125
e-value: 1.8E-7
score: 31.0
coord: 58..84
e-value: 3.9E-9
score: 36.3
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 99..127
score: 12.807
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 53..86
score: 13.102
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 99..132
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 58..91

Blast
[Close]
BLAST of TCONS_00058955-protein vs. Swiss-Prot (Human)
Match: PR40B (Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1)

HSP 1 Score: 460.685 bits (1184), Expect = 4.721e-150
Identity = 278/619 (44.91%), Postives = 400/619 (64.62%), Query Frame = 0 
Query:   56 KKAWTEHTAPDGRTYYFNSETKTSLWTKPEDLKTEIEKQIDNCPWKEYKSDTGRAYFHNEETKESKWTVPEELQNLKDKLEEE-----------------------------------EKMIAEKPASSSEEEVTDDE-------ASESEEKPSQ-DESEDEEKEEEVKMKEEQPRVEWNTKEEAKQAFKDLLREKNVPSTATWEQATKLIVHDYRFEALPKVNEKKQVFNTYKQQKSNQEKEQEREKMKENREKLQVYLEEHPRMHSHVRYRKACEMFENDKQWNSVAERDRKDLFDDVLFFLAKKEKEDEKKLHMYNKQYMMETFAKMPGLSYRTLWSEAQEMLKDNSVYKSDDKIQEIMMEEKGDALAAFAEFIRELERDFEEERIHEKNRLKRQHRKFREGFCALLDDLHKHGYINSLSRWMDLFPKISKDDRFDNMLGIPGSTPLDLFKFFVEDLKSRYSDEKRIVKDILKDKQFTVEIKTSFDEFSDVVLADERSHTLDAGNIKSTFNSMREKAESREKDRARKEEREVRRKESSFRSMLKQAAPPIEPSDQWDDVRERFEKEDAFQSIAMESERNRLFNEW------------NEQNKSKKRKDKKKHKKRS 619
            +  W+EH APDGR YY+N++ K S+W KP  LK++ E  +  CPWKEYKSDTG+ Y++N ++KES+WT P++L +L+  +++E                                     ++  +P  S + +V +           + EE PS   + + +++EEE K + E+  + W+ +E+AKQAFK+LLR+K VPS A+WEQA K++V D R+ ALPK++EKKQ FN YK Q+  +EKE+ R + KE ++ LQ +LE+H RM S  RYR+A + F   + W  V ERDRK+++DDVLFFLAKKEKE  K+L   N Q +      M  ++++T WS+AQ+ L DN  +  D ++Q +   +K DAL  F E IR LER+ EEER   + R +RQ RK RE F   LD+LH+ G ++S+S WM+L+P +S D RF NMLG PGSTPLDLFKF+VE+LK+R+ DEK+I+KDILKD+ F VE+ T+F++F+ V+  D+R+  LDAGNIK TFNS+ EKAE+RE++R ++E R +RR+E++FRSML+QA P +E    W++VRERF  + AF+ I +ESER RLF E+            + + +   RK KK H KRS
Sbjct:   95 RALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVLVKQEAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLLEPEPGGSEDCDVLEATQPLEQGFLQQLEEGPSSSGQHQPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNM---DKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHHKRS 710
The following BLAST results are available for this feature:
BLAST of TCONS_00058955-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PR40B4.721e-15044.91Pre-mRNA-processing factor 40 homolog B OS=Homo sa... [more]
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