TCONS_00058700-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058700-protein
Unique NameTCONS_00058700-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058700-protein ID=TCONS_00058700-protein|Name=TCONS_00058700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MAEEVEKVTKPGIVYLSRIPPSMNPLKVKNLLSQFGEISRTFLQPEEEFV
RKRRKKHGGNTKKQFTEGWLEFKDKKIARTVARSLNNTKIGGKKRYYYHD
DIWNIKYLPKFQWTHIKEKLAYEKAARGQRMRTEISQAKKEASFYLENVG
KGKAMTAMQERREKKRKRKLGEETASSETQKNEEEADVPPEKLRKKFYKK
EMVGSSKVKERANKSQLSSALLSEIFTSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036981XLOC_036981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058700TCONS_00058700Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034353ABT1/ESF2_RRM
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.330coord: 2..98
e-value: 1.1E-8
score: 34.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..229
IPR034353ABT1/ESF2, RNA recognition motifCDDcd12263RRM_ABT1_likecoord: 12..109
e-value: 8.12424E-55
score: 172.006
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 10..94

Blast
[Close]
BLAST of TCONS_00058700-protein vs. Swiss-Prot (Human)
Match: ABT1 (Activator of basal transcription 1 OS=Homo sapiens GN=ABT1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.800e-48
Identity = 73/153 (47.71%), Postives = 106/153 (69.28%), Query Frame = 0 
Query:   11 PGIVYLSRIPPSMNPLKVKNLLSQFGEISRTFLQPEEEFVRKRRKKHGG------NTKKQFTEGWLEFKDKKIARTVARSLNNTKIGGKKRYYYHDDIWNIKYLPKFQWTHIKEKLAYEKAARGQRMRTEISQAKKEASFYLENVGKGKAMTA 157
            PGIVYL  IPP   PL V+NLLS +GE+ R F Q E+ FVR+++K          +  K +TEGW+EF+DK+IA+ VA SL+NT +G ++R  +  D+WN+KYL +F W+H+ E LA+E+  R QR+R E++QAK+E  FYL++V +G+   A
Sbjct:   45 PGIVYLGHIPPRFRPLHVRNLLSAYGEVGRVFFQAEDRFVRRKKKAAAAAGGKKRSYTKDYTEGWVEFRDKRIAKRVAASLHNTPMGARRRSPFRYDLWNLKYLHRFTWSHLSEHLAFERQVRRQRLRAEVAQAKRETDFYLQSVERGQRFLA 197
The following BLAST results are available for this feature:
BLAST of TCONS_00058700-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABT12.800e-4847.71Activator of basal transcription 1 OS=Homo sapiens... [more]
back to top