TCONS_00058506-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058506-protein
Unique NameTCONS_00058506-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058506-protein ID=TCONS_00058506-protein|Name=TCONS_00058506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MVNLLTKLSAPRGTIVHQTSEKGQRKININVGGEKHSPYVSTLQNVPDSP
LSWIIRDEFRNDLDYDSVEDVYYFDRHPGIFSAILNYFQTGKLHCPRDVC
GPMFQEELNFWGIDETQMEACCWPNYTTHREIQENLKMLHIARKKQHCQQ
GSEDVTKQHPPLTTDPYRMISSGQAKWHRYQMKIWEVLDEPYSSGLAKMF
AYISLFFIVLSIITYSLITIEDVNFKQTPCPTTQELLVNQLANNLTSSNT
SVTSCTSRTQGANILHGFEILFALWFTLEIVLRLTFCPDKLDYLKTLSNW
VDLFAVIPVYLLLLWTDQSQVLMMLNMIRYLRIFRLFKLLYDLHILGKTL
QASINQLLILLIILTVPTIMFSSFVYYSELFGGSEKSKQDFSEIQKGMWW
SVITSTTVGYGDIVPESIIGKLVGAAASVIGIIIVSITASVIGCNFEQYY
SVAITQLRIPAKNSTAFKEVVKRNTLIAQLRPHGKDVNSSIKSDDSKDSG
YGRSPVPPSDSANASPERQQQLTEKNIVVAMDRNGQPNINGTAKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036859XLOC_036859Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058506TCONS_00058506Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR005821Ion_trans_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 72..85
score: 63.1
coord: 188..200
score: 45.3
coord: 87..102
score: 78.12
coord: 105..126
score: 64.14
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 267..290
score: 37.24
coord: 391..413
score: 54.5
coord: 191..219
score: 43.37
coord: 356..379
score: 36.6
coord: 71..90
score: 50.21
coord: 293..313
score: 30.24
coord: 420..446
score: 32.49
coord: 327..353
score: 42.99
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 25..128
e-value: 2.8E-5
score: 33.5
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 27..121
e-value: 1.9E-23
score: 82.5
NoneNo IPR availableGENE3D1.20.120.350coord: 196..350
e-value: 2.6E-24
score: 85.0
NoneNo IPR availableGENE3D1.10.287.70coord: 351..498
e-value: 9.6E-18
score: 63.6
NoneNo IPR availableGENE3D3.30.710.10coord: 21..139
e-value: 2.4E-26
score: 91.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..545
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 257..448
coord: 196..222
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 198..450
e-value: 1.7E-26
score: 92.9
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 26..128

Blast
[Close]
BLAST of TCONS_00058506-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.799e-96
Identity = 165/452 (36.50%), Postives = 249/452 (55.09%), Query Frame = 0 
Query:   26 KININVGGEKHSPYVSTLQNVPDSPLSWIIRDEFRNDLDYDSVEDVYYFDRHPGIFSAILNYFQTGKLHCPRDVCGPMFQEELNFWGIDETQMEACCWPNYTTHREIQENLKMLHIA----RKKQHCQQGSEDVTKQHPPLTTDPYRMISSG-----QAKWHRYQMKIWEVLDEPYSSGLAKMFAYISLFFIVLSIITYSLITIEDVNFKQTPCPTTQELLVNQLANNLTSSNTSVTSCTSRTQGANILHGFEILFALWFTLEIVLRLTFCPDKLDYLKTLSNWVDLFAVIPVYLLLLWTDQS-----QVLMMLNMIRYLRIFRLFKL---LYDLHILGKTLQASINQLLILLIILTVPTIMFSSFVYYSELFGG-----SEKSKQDFSEIQKGMWWSVITSTTVGYGDIVPESIIGKLVGAAASVIGIIIVSITASVIGCNFEQYYSVAIT 455
            +I INVGG +H  Y STL+ +P + L+W+   +  +  DYD   D ++FDRHPG+F+ ILNY++TGKLHCP DVCGP+++EEL FWGIDET +E CCW  Y  HR+ +E L     A            G  D       L       +S          W R+Q +IW + ++PYSS  A+  A+ SLFFI++SI T+ L T E  N      P   +  +  + N       +        +    L   E +  +WFT E ++R+ FCP+K++++K   N +D  A++P YL +  +  S      VL  L ++R++RI R+FKL      L +LG TL+AS N+ L+L+I L +  ++F++ +YY+E  G      S      F  I  G WW+V+T TT+GYGD+ P++  G LVGA  ++ G++ +++   VI  NF  YYS+A+ 
Sbjct:    9 RIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFN------PIVNKTEIENVRNG------TQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
BLAST of TCONS_00058506-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNC12.799e-9636.50Potassium voltage-gated channel subfamily C member... [more]
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