TCONS_00058456-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058456-protein
Unique NameTCONS_00058456-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058456-protein ID=TCONS_00058456-protein|Name=TCONS_00058456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MKLINLGQFFKYKQNLQLNVRLVRNISDLKHKALKVAFFGTDEFSLTPLE
KLVQLRNETNLVEEVAVVSQFETQKKSTKGIIPVVHRYVRENELPKIHWE
ELKINPKHHLDHDLAIVASFGEFIPSKVIKCFPKGAINIHPSLLPRWRGA
SPLIHTILAGDTVTGISFIEISPKKFDIGKILYQAEFQIPPRCTTENLRD
ILSNKAADLLPEVIDNLPTLRENSIDQDDSETTHAPKISKTVGYIDFHEQ
NCDEIERTYRAVGQRVGIKSLWGGKQVKLENIVDIKMENESEITPGTCQY
SKKERMIWIKCKTGWVGVDGFQFDQRKKIISAQSFYNGYVIDKQTGKPGS
TKFETMIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036835XLOC_036835Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058456TCONS_00058456Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005793Formyl_trans_C
IPR005794Fmt
IPR002376Formyl_transf_N
IPR011034Formyl_transferase_C-like
Vocabulary: Molecular Function
TermDefinition
GO:0016742hydroxymethyl-, formyl- and related transferase activity
GO:0004479methionyl-tRNA formyltransferase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0071951conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016742 hydroxymethyl-, formyl- and related transferase activity
molecular_function GO:0004479 methionyl-tRNA formyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005793Formyl transferase, C-terminalGENE3D3.10.25.10coord: 240..346
e-value: 3.1E-15
score: 55.6
IPR005793Formyl transferase, C-terminalPFAMPF02911Formyl_trans_Ccoord: 237..339
e-value: 2.1E-12
score: 47.1
IPR005794Methionyl-tRNA formyltransferaseTIGRFAMTIGR00460TIGR00460coord: 34..340
e-value: 1.0E-64
score: 216.6
IPR002376Formyl transferase, N-terminalGENE3D3.40.50.170coord: 31..239
e-value: 3.8E-45
score: 153.5
IPR002376Formyl transferase, N-terminalPFAMPF00551Formyl_trans_Ncoord: 35..214
e-value: 4.9E-27
score: 94.7
IPR002376Formyl transferase, N-terminalSUPERFAMILY53328Formyltransferasecoord: 34..240
NoneNo IPR availableCDDcd08646FMT_core_Met-tRNA-FMT_Ncoord: 34..238
e-value: 1.51385E-68
score: 215.385
IPR011034Formyl transferase, C-terminal-likeSUPERFAMILY50486FMT C-terminal domain-likecoord: 238..339

Blast
[Close]
BLAST of TCONS_00058456-protein vs. Swiss-Prot (Human)
Match: FMT (Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens GN=MTFMT PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 1.826e-67
Identity = 119/336 (35.42%), Postives = 189/336 (56.25%), Query Frame = 0 
Query:   35 KVAFFGTDEFSLTPLEKLVQLR--NETNLVEEVAVVSQFETQKKSTKGIIPVVHRYVRENELPKIHWEELKINPKHHLDHDLAIVASFGEFIPSKVIKCFPKGAINIHPSLLPRWRGASPLIHTILAGDTVTGISFIEISPKKFDIGKILYQAEFQIPPRCTTENLRDILSNKAADLLPEVIDNLPTLRENSIDQDDSETTHAPKISKTVGYIDFHEQNCDEIERTYRAVGQRVGIKSLWGGKQVKLENIVDI--------KMENESEITPGTCQYSKKERMIWIKCKTGWVGVDGFQFDQRKKIISAQSFYNGYV----IDKQTGKPGSTKFETM 356
            +V FFGTD+F+   L  L   R   E  L++++ VV+       S KG+   V +Y  +++LP   W ++        ++D+ +VASFG  +   +I  FP G +N+HPS LPRWRG +P+IHT+L GDTVTG++ ++I PK+FD+G IL Q    +PP+ T + L  +LS   A++L  V+ NLP    N   Q     T+APKIS     I + EQ  ++I R YRA+G  + +++LW    +KL ++V++        K+  ++ I PG+  Y K+ +++ + CK GW+GV        KK ++A  FYNGY+          +P   +F+T+
Sbjct:   49 RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVT---MPSPSPKGL--PVKQYAVQSQLPVYEWPDVGSG-----EYDVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQALI-PGSVIYHKQSQILLVYCKDGWIGVRSVML---KKSLTATDFYNGYLHPWYQKNSQAQPSQCRFQTL 370
The following BLAST results are available for this feature:
BLAST of TCONS_00058456-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMT1.826e-6735.42Methionyl-tRNA formyltransferase, mitochondrial OS... [more]
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