TCONS_00058420-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058420-protein
Unique NameTCONS_00058420-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length172

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058420-protein ID=TCONS_00058420-protein|Name=TCONS_00058420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MFYHISLDHEILLHPRYFGPTLLQTVKQKLFTEVEGTCTGKYGFVIAVTT
IDNIGAGHIQPGRGFVVYPVKYKAIVFRPFKGEVLEAVVTQVNKAGLFTE
IGPLSCFISRHSIPPDMEFDPNSNPPCYKTKDEEVVIQQDDEIRLKIVGT
RVDANDIFAIGTLMDDFLGLVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036808XLOC_036808Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058420TCONS_00058420Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR005576RNA_pol_Rpb7_N
IPR003029S1_domain
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 80..162
e-value: 2.2E-4
score: 30.6
NoneNo IPR availableGENE3D2.40.50.140coord: 83..171
e-value: 3.6E-14
score: 52.2
NoneNo IPR availableCDDcd04329RNAP_II_Rpb7_Ncoord: 2..81
e-value: 9.43749E-40
score: 130.38
NoneNo IPR availableCDDcd04462S1_RNAPII_Rpb7coord: 81..169
e-value: 1.28903E-51
score: 161.275
IPR005576RNA polymerase Rpb7, N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 12..77
e-value: 8.0E-16
score: 58.1
IPR005576RNA polymerase Rpb7, N-terminalGENE3D3.30.1490.120coord: 1..82
e-value: 2.5E-29
score: 101.3
IPR005576RNA polymerase Rpb7, N-terminalSUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..77
IPR003029S1 domainPFAMPF00575S1coord: 78..159
e-value: 2.4E-18
score: 66.1
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 78..169

Blast
[Close]
BLAST of TCONS_00058420-protein vs. Swiss-Prot (Human)
Match: RPB7 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 5.936e-116
Identity = 155/172 (90.12%), Postives = 165/172 (95.93%), Query Frame = 0 
Query:    1 MFYHISLDHEILLHPRYFGPTLLQTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGHIQPGRGFVVYPVKYKAIVFRPFKGEVLEAVVTQVNKAGLFTEIGPLSCFISRHSIPPDMEFDPNSNPPCYKTKDEEVVIQQDDEIRLKIVGTRVDANDIFAIGTLMDDFLGLVS 172
            MFYHISL+HEILLHPRYFGP LL TVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAG IQPGRGFV+YPVKYKAIVFRPFKGEV++AVVTQVNK GLFTEIGP+SCFISRHSIP +MEFDPNSNPPCYKT DE++VIQQDDEIRLKIVGTRVD NDIFAIG+LMDD+LGLVS
Sbjct:    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
The following BLAST results are available for this feature:
BLAST of TCONS_00058420-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPB75.936e-11690.12DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
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