TCONS_00057873-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057873-protein
Unique Name	TCONS_00057873-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	261

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057873-protein ID=TCONS_00057873-protein|Name=TCONS_00057873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MVSSNVVYDFSGKVVLITGAASGIGQGTAYMFAKSGARLVVTDRDETNLK
ETAKKCEEMSKQKPLAIVGDLTVQSDLENLINKTMETFKQLDVLINNAGD
SIMGTCLQTSTEDFDKMMNINIRSVFQLTKMAIPHLKKTKGNVINVSTLG
SSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATDKCS
NSSDPSVKAAMERSKMTHALGRAGTVDEVAQAILFLASGAASYITGASIP
IDGGRSTMIPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036484	XLOC_036484	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057873	TCONS_00057873	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 14..31 score: 45.57 coord: 89..100 score: 50.13 coord: 161..180 score: 38.76 coord: 135..151 score: 25.89 coord: 182..199 score: 35.19 coord: 219..239 score: 38.92
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 141..149 score: 34.48 coord: 161..180 score: 38.82 coord: 89..100 score: 53.46
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 19..254 e-value: 1.7E-64 score: 217.5
None	No IPR available	GENE3D	3.40.50.720		coord: 5..56 e-value: 3.2E-13 score: 48.9 coord: 57..260 e-value: 1.4E-60 score: 204.4
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 12..257

Blast

[Close]

BLAST of TCONS_00057873-protein vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.176e-39
Identity = 82/248 (33.06%), Postives = 139/248 (56.05%), Query Frame = 0

Query:   10 FSGKVVLITGAASGIGQGTAYMFAKSGARLVVTDRDETNLKETAKKCEEMSKQKPLAIVGDLTVQSDLENLINKTMETFKQLDVLINNAGDSIMGTCLQTSTEDFDKMMNINIRSVFQLTKMAIPHL--KKTKGNVINVSTLGSSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATDKC-SNSSDPSVKAAMERSKMTHALGRAGTVDEVAQAILFLASGAASYITGASIPIDGG 254
             +G+ VL+TGA  GIG+GT      +GAR+V   R + +L    ++C  +   +P+ +  DL    D E    + + +   +D+L+NNA  +++   L+ + E FD+   +N+R+V Q++++    L  +   G ++NVS+  S R     S YC +K ALD  T+  A+ELG  ++RVN VNP+++ T    +  SDP  KA    +++   LG+   V+ V  AILFL S  +   TG+++P++GG
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCV--DL---GDWEA-TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH-KAKTMLNRI--PLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240

The following BLAST results are available for this feature:

BLAST of TCONS_00057873-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057873-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCXR	1.176e-39	33.06	L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ...	[more]

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TCONS_00057873-protein (polypeptide) - C. hemisphaerica