TCONS_00057570-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057570-protein
Unique NameTCONS_00057570-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1464

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057570-protein ID=TCONS_00057570-protein|Name=TCONS_00057570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1464bp
CDWEARNPPRPPPPSLNIGKNFFKSESGRKIKMAGSYREISIPVSRVGNI
LKLQSKKGNHLVTNISSKVFEEKGGGFHFSKCSKLSANRRISWRYFDNII
ELEEISDDYNLFNNKVQITVSEEFLLPNVVIKENGEELLVFLATTSSVHT
LSFQHPNHQKYGFIIPQGMDVSLPSLFHNINNNLNHTQHELSEPCFQFDV
SLSKGGNVNYGLVTEANTLLSVELVEGEECNITELKETSLAQRLWTGFVP
SFVRGESANWMGAESVVMESLEDEAYAFTICKDLKIRVWSITTQTCILTK
DLVEHIPDKLDSQPNMVGTLSLKKSEKDSSDSQFKLAAHCCLLYGSQFLV
MECFKEESNLVMVHVSNFFSDHTNVQDFVITNHHLWSCWKNEDEHQLCYA
PIEGGREFERGWHDVHLKASQKEELFIGIFQDAKEAYLKKIFTPNFASSE
TILKALQVYVKTIDSGHEFIPANDCNLPTLKESIVAVLDLEVERNTLNRE
LEVAELQEINAHCWSRFYSIILQCLQSRDAPLGLHINETDGKAYIIRKEC
EGMCSELPWVDHLYQSDLTRCEAIQGYVEMQLDTAGDSINEDIVLLFDCL
KSIPEQFNGDVILGIDKDLDGNEDVKTFLSSMASCLITNTSDFEQLVGDS
VERGDYYLYLEGRLKNIKDIKRAVDFILNALDVVDPATGDESEIESSGLS
GEQNQQIFCSKLGVKLVTNLLLTTAESRMHLCRDLYVLLKFMSTMAGKVG
IDLSDAREFESLTSSTCYELLRSYHTIVWAATNPMTTIDPNVVDNNITNL
AALRLTERSPASKTARKIDETVNTDEESILSHFVHDVGLLSAVKKYRSPH
RSSIQDVMNFIKNSCLNQLWVLNDKSSDFPEYLAAHGQYALLNEYLHFCD
EWCLVNRGTKDFLLAQSYLGTDQPHKALKYFISAARGISLREPLLMNILE
DENCSSKHHALVQYFIKVMRLFEHYNFPSFVISAASSALTIAKKDEPNIP
MLWSVIFKYHLELQHHNEAYAAIVHNPDKARRENCLRHFIITLCDRGLFH
EICTYPYVNLQEEVVSIIESRARTMDMTVNRFYDLLYSFHTIKSDYRKAA
TTMFEQACRLQVEMHGLKSLQKQAKCYLASITALQLVDSKYAWIVRPEEK
ISQQPSPVPGKAGSNVNEYSQSPKRREDGEQIFYSTMKKRRNVRTVIVEL
NDLEKEYLLVLARLKLVQHGKNETVAIGPGLSASETIGLLSQLGLFDMSF
SVALKFNLPLKGIFEALASKCANLMKYKPSEFDERWNWLTLNEINSIQLV
TSKSATQQALHLLQSYLKKFSKQNSSLHLKVVASKFLSINCELPSWLIKD
YKTANPAELLHLYICYDMVSEATELSLGYIDAVLGHGKEQFGLNTALHAT
TPPVWLPYTAFDQILKPLRSNQDNPELATLLQRLETKLEEYFNQLEITSC
DKIEYVSRTQQRMM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036303XLOC_036303Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057570TCONS_00057570Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 487..507
NoneNo IPR availableCOILSCoilCoilcoord: 1424..1451
NoneNo IPR availablePFAMPF11715Nup160coord: 72..548
e-value: 3.5E-42
score: 144.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1152..1175

Blast
BLAST of TCONS_00057570-protein vs. Swiss-Prot (Human)
Match: NU160 (Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3)

HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 421/1421 (29.63%), Postives = 692/1421 (48.70%), Query Frame = 0
Query:   70 FEEKGGGFHFSKCSKL---SANRRISWRYFDNIIELEEISDDYNLFNNKVQITVSEEFLLPN-VVIKENGEELLVFLATTSSVHTLSFQHPNHQKYGFIIPQGMDVSLPSLFHNINNNLNHTQHELSEPC-FQF--------------DVSLSKGGNVNYGLVTEANTLLSVEL----VEGEECNITELKETSLAQRLWTGFVPSFVRGESANWMGAESVVMESLEDEAYAFTICKDLKIRVWSITTQTCILTKDLVEHIPDKLDSQPNMVGTLSLKKSEKDSSDSQFKLAAHCCLLYGSQFLVMECFKEESNLVMV-HVSNFFSDHTNVQDFVITNHHLWSCWKNEDEHQLCYAPIEGGREFERGWHDVHLKASQKEELFIGIFQDAKEAYLKKIFTPNFASSETILKALQVYVKTIDSGHEFIPANDCNLPTLKESIVAVLDLEVERNTLNRELEVAELQEINAHCWSRFYSIILQCLQSRDAPLGLHINETDGKAYIIRKECEGMCSELPWVDHLYQSDLTRCEAIQGYVEMQLDTAGDSINEDIVLLFDCLKSIPEQFNGDVILGIDKDLDGNEDVKTFLSSMASCLITNTSDFEQLVGDSVERGDYYLYLEGRLKNIKDIKRAVDFILNALDVVDPATGDESEIE-SSGLSGEQN-------QQIFCSKLGVKLVTNLLLTTAESRMHLCRDLYVLLKFMSTMAGKVGIDLSDAREFESLTSSTCYELLRSYHTIVWAATNPMTTIDPNVVDNNITNLAALRLTERSPASKTARKIDETVNTDEESILSHFVHDVG-------LLSAVKKYRSPHRSSIQDVMNFIKNSCLNQLWVLNDKSSDFPEYLAAHGQYALLNEYLHFCDEWCLVNRGTKDFLLAQSYLGTDQPHKALKYFISAARGISLREPLLMNILEDENCSSKHHALVQYFIKVMRLFEHYNFPSFVISAASSALTIAKKDEPNIPMLWSVIFKYHLELQHHNEAYAAIVHNPDKARRENCLRHFIITLCDRGLFHEICTYPYVNLQEEVVSIIESRARTMDMTVNRFYDLLYSFHTIKSDYRKAATTMFEQACRLQVEMHGLKSLQKQAKCYLASITALQLVDSKYAWIVRPEEKISQQPSPVPGKAGSNVNEYSQSPKRREDGEQIFYSTMKKRRNVRTVIVELNDLEKEYLLVLARLKLVQHGKNETVAIGPGLSASETIGLLSQLGLFDMSFSVALKFNLPLKGIFEALASKCANLMKYKPSEFDERWNWLTLNEINSIQLVTSKSATQQALHLLQSYLKKFSKQNSSLHLKVVASKFLSINCELPSWLIKDYKTANPAELLHLYICYDMVSEATELSLGYIDAVLGHGKEQFGLNTALHATTPPVWLPYTAFDQILKPLRSNQDNPELATLLQRLETKLEEYFNQLEITSCD 1451
            + E  GGF++ +  KL   + NR I W+   + +EL E S D NL NN +++      +LP  V + E    +++ + T  +VH L   HP+      ++   +D  + S+F +I       + + ++PC +Q                  LS  G   + L   +  +  ++L    + G   ++ ELK++S+ QRL TG++P+ +RG+ +      S+ +  +E +A+ F +C+D K+R+WS   Q C++  D++E++P K D +        L+ +   +      +  H       QF + +    ESN   + H+S+ F+    + DF +T+  +W+ W ++ E+Q     I         W+ V ++   +EE+ I   QD +E YL+ +FTP   ++E + KALQ++ +  +         D +   LK+ +   ++ E++ +    E    E + +    W +FY+  LQ  ++   PL LH+N       +++K           VDHLY   L   E +    E  +    D I  D++ L  CL+ I E    D+ + ++      +  +     +   +IT   D E ++ D          +  +L+ I++   A+  ++  +D        E+E+E   G +  Q         Q++ S     +V   +   A +R  +CRDL +L + +  +   V        + +         LL SY+ I W +    T +  + +++N+ +L+ L LT+ S A    R +     +  ++I+  F  +V        L S  K   S    +  +++  I +  L  LW  N     F E L  + QY  L +Y+     WC VN G+  F+L + YL T +  KAL+ F  AA  +  +E  L  ++  E+        +QY+ KV+RL +    P  VI  A+SA+T A  D  +   L + IFK+HL+L H+++AY A+   PD +R+ +CLR  ++ LC+R    ++  +PYVNL  EVV IIESRAR +D+  + +Y+LLY+FH  + +YRKA T MFE   RL  E+  L+ L+KQ  CYLA++  L+L+  +YAWIV+P              +G+  +    SPKR  DGE     T     N +  I+EL DLEKE  L   RL L QH  +  VA+    SA E + LL Q GLFD + S+   F LPL  +FE LA KC  L     +   E W WL  N+++S+      SAT +A  LL +YL+++  QN+  H   V +K LS    LP+WLI  YK  + AELL LY+ YD++ EA +L   Y+DAVLG G + FG+   L AT P VWLPY++ DQ+L+ L  N  N     L Q++  KLE+Y  +++  + D
Sbjct:   79 YSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCSVLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSELV---VDSQMQSIFTDIG------KVDFTDPCNYQLIPAVPGISPNSTASTAWLSSDGEALFALPCASGGIFVLKLPPYDIPGM-VSVVELKQSSVMQRLLTGWMPTAIRGDQSPSDRPLSLAVHCVEHDAFIFALCQDHKLRMWSYKEQMCLMVADMLEYVPVKKDLRLTAGTGHKLRLAYSPTMGLYLGIYMHAP--KRGQFCIFQLVSTESNRYSLDHISSLFTSQETLIDFALTSTDIWALW-HDAENQTVVKYINFEHNVAGQWNPVFMQPLPEEEIVIRDDQDPREMYLQSLFTPGQFTNEALCKALQIFCRGTERNL------DLSWSELKKEVTLAVENELQGSVTEYEFSQEEFRNLQQEFWCKFYACCLQYQEALSHPLALHLNPHTNMVCLLKKGYLSFLIPSSLVDHLY---LLPYENLLTEDETTISDDVD-IARDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMIT--IDVENVMED----------ICSKLQEIRNPIHAIGLLIREMDY-------ETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATDVPLDTLESNLQHLSVLELTD-SGALMANRFV-----SSPQTIVELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSN-PGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVG-KEEFLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQP-------------VSGAVYDRPGASPKRNHDGECTAAPT-----NRQIEILELEDLEKECSLARIRLTLAQHDPS-AVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYH-HCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRD 1429          
The following BLAST results are available for this feature:
BLAST of TCONS_00057570-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1600.000e+029.63Nuclear pore complex protein Nup160 OS=Homo sapien... [more]
back to top