TCONS_00057297-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057297-protein
Unique NameTCONS_00057297-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057297-protein ID=TCONS_00057297-protein|Name=TCONS_00057297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MKNVQVLVVLASLAIYSCSICPETMSDREYCSCYSNTKQVTCVGKSLTAI
PRGIPQDTVELTLENNIIQRITKDDLKGLTSLKRLQLHQNSISSIEDDSF
MDLTSLETLSLYKNQVGRITANTFNGLSKLETLWMNEFSPRGTPLCIEDG
SFTKTPELLYLFIEDNDFTYLSDGTFTGLSKLVTLRLTLDRIGLISENAL
KQFPSNVFIDLANPTFKSGVCCCSTAFAIQKYLKSPTSAAENQALVCSPD
RCKDLLMCLQSYNGTCVRQLPPTTTTTSTTTTTTTTTTTTSTEPPSTTEE
PDPVKPVTLPPATGSCPTECNCRPDTKLVSCSGRQLSRVPSNIPADTERL
ILSANNIDRIRRYDFYMLTNLKELQLHENRITVIDDYSFEDLHQLQSLFL
N
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036102XLOC_036102Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057297TCONS_00057297Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000372LRRNT
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000372Leucine-rich repeat N-terminal domainSMARTSM00013lrrnt1coord: 26..60
e-value: 3.5
score: 13.4
coord: 315..349
e-value: 2.7E-6
score: 36.9
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 368..389
e-value: 25.0
score: 12.4
coord: 79..100
e-value: 9.6
score: 15.2
coord: 103..129
e-value: 100.0
score: 7.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..308
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score: 5.0
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 368..391
e-value: 0.0065
score: 25.7
coord: 155..178
e-value: 100.0
score: 5.1
coord: 79..102
e-value: 0.065
score: 22.4
coord: 103..126
e-value: 0.51
score: 19.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 311..401
e-value: 1.1E-20
score: 73.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 25..249
e-value: 1.6E-33
score: 115.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 317..401
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 29..218
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 348..401
e-value: 2.5E-11
score: 43.1
coord: 60..115
e-value: 2.1E-11
score: 43.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 157..178
score: 4.547
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 346..367
score: 5.178
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 105..126
score: 5.633
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 370..391
score: 7.881
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 81..102
score: 7.928

Blast
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BLAST of TCONS_00057297-protein vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 7.514e-28
Identity = 99/368 (26.90%), Postives = 153/368 (41.58%), Query Frame = 0 
Query:   33 CYSNTKQVTCVGKSLTAIPRGIPQDTVELTLENNIIQRITKDDLKGLTSLKRLQLHQNSISSIEDDSFMDLTSLETLSLYKNQVGRITANTFNGLSKLETLWMNEFSPRGTPLCIEDGSFTKTPELLYLFIEDNDFTYLSDGTFTGLSKLVTLRLTLDRIGLISENALKQFPSNVFIDLANPTFKSGVCCCSTAFAIQKYLKSPTSAAENQALVCSPDRCKDLLMCLQSYNGTCVRQLPPTTTTTSTTTTTTTTTTTTSTEPPSTTEEPDPVKPVTLPPATGSCPTECNCRPDTKLVSCSGRQLSRVPSNIPADTERLILSANNIDRIRRYDFYMLTNLKELQLHENRITVIDDYSFEDLHQLQSLFL 400
            C  +   V C G  L A+PRGIP++   L L+ N I RITK D  GL +L+ L L  N +S IE  +F DL  LE L L KN++  +    F    KL  L ++E   +G P      +F    ++  L +++N  + + DG F  L  L  L L  + I  I   +    P    + L +       C C  A+ +  +L+   +  +   L  +P         L+ +N              +             +EPPS                + SCP+ C C     +V C G+ L  +P+N+P     + L  N+I  I    F     LK + + +N+I+ I   +F+ L  L SL L
Sbjct:   38 CTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIP----RKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHL---YCDCHLAW-LSDWLRQRRTVGQ-FTLCMAPVH-------LRGFN-------------VADVQKKEYVCPAPHSEPPSCNAN------------SISCPSPCTC--SNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVL 362

HSP 2 Score: 80.4925 bits (197), Expect = 3.523e-16
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 0 
Query:  310 PPATGSCPTECNCRPDTKLVSCSGRQLSRVPSNIPADTERLILSANNIDRIRRYDFYMLTNLKELQLHENRITVIDDYSFEDLHQLQSLFLN 401
            PPA  +CPT+C C   +  V C G  L  VP  IP + ERL L  NNI RI + DF  L NL+ L L +N+++VI+  +F+DL QL+ L LN
Sbjct:   29 PPAV-ACPTKCTCSAAS--VDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLN 117
The following BLAST results are available for this feature:
BLAST of TCONS_00057297-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT37.514e-2826.90Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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