TCONS_00056878-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056878-protein
Unique Name	TCONS_00056878-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	406

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056878-protein ID=TCONS_00056878-protein|Name=TCONS_00056878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MRLLTIFTLGLIVAFAQSSRITVCYYTNWAQYRYGDGVKFLPEDIDPNLC
THILYSFAKIDPTSHEVLNYEWNDDSMIQRVIALKTQNPSLKVICSIGGW
NHEKQPRYSNMAQTAATRKTFIDSLMKYLSDHKYDGVDIDWEYPGNRPTG
TPAGDKEKYTTLLQEIRARFTQENTGYSLTASVAAGRKVIVKAYEIEKIK
DYVDWVNLMAYDLHGSWENVTGHTTAMADVVPTVPDSLNAWLEGGMPPSQ
IALGIATYGRSFTLANAKNAELGAPANGPGLAGRYTRAQGFLSYYEVCAS
DWDAMTTYEASAAKAPYASKNNQWIGYETPESVAYKVKTLVNGHNLKGIA
VWALDLDDFGNKFCKLGKYPIINAAKNAMSADANDNKIKFHSSARKQKVC
VXSRCQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035834	XLOC_035834	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056878	TCONS_00056878	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011583	Chitinase_II
IPR029070	Chitinase_insertion
IPR001223	Glyco_hydro18_cat
IPR001579	Glyco_hydro_18_chit_AS
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Molecular Function**
Term	Definition
GO:0008061	chitin binding
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0008061	chitin binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011583	Chitinase II	SMART	SM00636	2g34	coord: 20..357 e-value: 2.8E-119 score: 412.3
IPR029070	Chitinase insertion domain	GENE3D	3.10.50.10		coord: 271..312 e-value: 4.4E-22 score: 78.1
IPR029070	Chitinase insertion domain	SUPERFAMILY	54556	Chitinase insertion domain	coord: 258..327
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 22..357 e-value: 4.5E-87 score: 292.6
None	No IPR available	GENE3D	3.20.20.80		coord: 313..390 e-value: 1.8E-12 score: 46.7 coord: 21..270 e-value: 3.7E-75 score: 252.5
IPR001579	Glycoside hydrolase, chitinase active site	PROSITE	PS01095	CHITINASE_18	coord: 134..142
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 19..266 coord: 337..380

Blast

[Close]

BLAST of TCONS_00056878-protein vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 5.059e-111
Identity = 166/387 (42.89%), Postives = 248/387 (64.08%), Query Frame = 0

Query:    7 FTLGLIVAFAQSSRITVCYYTNWAQYRYGDGVKFLPEDIDPNLCTHILYSFAKIDPTSHEVLNYEWNDDSMIQRVIALKTQNPSLKVICSIGGWNHEKQPRYSNMAQTAATRKTFIDSLMKYLSDHKYDGVDIDWEYPGNRPTGTPAGDKEKYTTLLQEIRARFTQE--NTGYS---LTASVAAGRKVIVKAYEIEKIKDYVDWVNLMAYDLHGSWENVTGHTTAM--------ADVVPTVPDSLNAWLEGGMPPSQIALGIATYGRSFTLANAKNAELGAPANGPGLAGRYTRAQGFLSYYEVCASDWDAMTTYEASAAKAPYASKNNQWIGYETPESVAYKVKTLVNGHNLKGIAVWALDLDDFGNKFCKLGKYPIINAAKNAMS 380
            F + L++ +  ++++ VCY+TNWAQYR G+  +FLP+D+DP+LCTH++Y+FA +  T+H++   EWND+++ Q    LK  NP LK + +IGGWN   Q ++++M  TA  R+TF++S +++L  + +DG+D+DWEYPG++  G+PA DKE++TTL+Q++   F QE   +G     L+A+V AG+  +   YE++KI   +D+VNLMAYD HGSWE VTGH + +        A     V  ++  WL+ G P S++ LG+ TYGRSFTLA++ +  +GAPA G G  G +T+  G L+YYEVC+  W   T       K PY  ++NQW+G++  ES   KV  L     L G  VWALDLDDF    C  G+YP+I   +  +S
Sbjct:   10 FMVLLMIPWGSAAKL-VCYFTNWAQYRQGE-ARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ--GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQ-KGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELS 386

The following BLAST results are available for this feature:

BLAST of TCONS_00056878-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIT1	5.059e-111	42.89	Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV...	[more]

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TCONS_00056878-protein (polypeptide) - C. hemisphaerica