TCONS_00056852-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056852-protein
Unique NameTCONS_00056852-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056852-protein ID=TCONS_00056852-protein|Name=TCONS_00056852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MTTTYDISPTLVQCFGIILIGYLTGKFKMITPNQGKGLATFIGTFSLPAL
IFKAMIEVKFPLINWTFWTALLIAKAIVFLLVMIPSLFLEKDKPYAAAGL
YSIFVSQSNDMAFGLPLLQAVFNDPQTKFLVNYVFLTAPISLAILNPIGF
ALLEYQKAKDYQIESGKKSSIGRIMWTTVKGVITNPLVFMIVFAIIFNFI
FHSKLPPVIDGLFTSFSNAFGATALFYLGWKLGCCQPDDEKMTGLSYALP
VILVLLKSVFMPILMTFLTSFLTDGFINDSNSVQAGANATMKYKNATSYK
TFAFLYGEIPTAPTVLLYANKYNFGEELVGSGLVLGTLFAAPMLFISIRM
LQVNNMLNVNQFDVLIGKVAKDVSIISIVCCVYVLAVLFSLRAYRRKPHS
LTMILIGFQFLLALSGAIFKDFIDVQSGSLRVLVFFVLFALFSCPLWCSM
VAHRLSLIARKKDITARIHRYLLVACFCIPFVMALIVAMVTPHTDLSDGT
TYFYLFNCFKQHASIAALYTIINVFTLACILFAFICVKKMDLLRTVKTNN
SYSPLLQKSYKYSTLQGEPLKLESHKVDYPLHHITREESYGDETSIERSM
ESMESIQINQKMSERSHITHHVVLLLIMSIVIALNISITVWSNLDKSLSN
VQGLYLELRMASVVLTYGQGFFSFATFGFIKEFFMLGCFEKVYKQYLKLR
GRKKITLECESELDIDILLLRKRFIKHHLVQCSKDIVRCLSFRLRKFEGV
FTGTCLIDWLLEEGLITDRADGIKYGNMLLRGRVIEHCLQEHYFYDLPYF
YQFTGRAFEFYALQQETGSIEVALKDEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035813XLOC_035813Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056852TCONS_00056852Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000591DEP_dom
IPR004776Mem_trans
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000591DEP domainSMARTSM00049DEP_3coord: 735..805
e-value: 1.1E-8
score: 44.9
IPR000591DEP domainPFAMPF00610DEPcoord: 743..803
e-value: 4.7E-12
score: 45.7
IPR000591DEP domainPROSITEPS50186DEPcoord: 747..805
score: 12.483
IPR004776Membrane transport proteinPFAMPF03547Mem_transcoord: 10..169
e-value: 1.6E-14
score: 53.1
NoneNo IPR availableGENE3D1.20.1070.10coord: 364..681
e-value: 6.7E-8
score: 31.4
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 718..819
e-value: 2.9E-14
score: 52.5
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 721..810

Blast
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BLAST of TCONS_00056852-protein vs. Swiss-Prot (Human)
Match: GP155 (Integral membrane protein GPR155 OS=Homo sapiens GN=GPR155 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 4.975e-75
Identity = 162/498 (32.53%), Postives = 281/498 (56.43%), Query Frame = 0 
Query:    9 PTLVQCFGIILIGYLTGKFKMITPNQGKGLATFIGTFSLPALIFKAMIEVKFPLINWTFWTALLIAKAIVFLLVMIPSLFL-EKDKPYAAAGLYSIFVSQSNDMAFGLPLLQAVFNDPQTKFLVNYVFLTAPISLAILNPIGFALLEYQKAKDYQIESGKKSSIGRIMWTTVKGVITNPLVFMIVFAIIFNFIFHSKLPPVIDGLFTSFSNAFGATALFYLGWKLGCCQPDDEKMTGLSYALPVILVLLKSVFMPILMTFLTSFLTDGFINDSNSVQAGANATMKYKNATSYKTFAFLYGEIPTAPTVLLYANKYNFGEELVGSGLVLGTLFAAPMLFISIRMLQVNNMLNVNQFDVLIGKVAKDVSIISIVCCVYVLAVLFSLRAYRRKPHSLTMILIGFQFLLALSGAIFKDFIDVQSGSLRVLVFFVLF-ALFSCPLWCSMVAHRLSLIARKKDITARIHRYLLVACFCIPFVMALIVAMVTPHTDLSDGTTYFY 504
            P L++CFGI+L GY+ G+  +IT  Q KGL  F+  F+LPAL+FK M+ + F  ++W+F  ++LIAKA VF +V + +L +   D  ++ AGL+ IF +QSND A G P+++A++     ++L  Y++L APISL +LNPIGF   E QK KD Q  S  K    +I+   +  V+ NP+VFM+   I FNFI   K+P  ++       N+F  +ALFYLG  +       +++   ++ + ++L+  K + +P+L   +   L  G   DS              N TS   +AFLYG  P AP V ++A ++N   E++ SG+V+ T  +AP++++S  +L    M +       I  V+ D+SI+S++  ++ LA+L   + Y++ PH LT  L+  Q ++  +G +  +F+  ++   ++LVF +L+ +L+S  LW  ++A  L L+ +++ +   +   ++   + IP ++  ++ +   H   S  + +FY
Sbjct:   44 PALLECFGIVLCGYIAGRANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVLTLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYL-QYIYLVAPISLMMLNPIGFIFCEIQKWKDTQNASQNKI---KIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVYVENFLDGLGNSFSGSALFYLGLTM---VGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVELLDKG---DS------------VVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYVSAWLLTFPTM-DPKPLAYAIQNVSFDISIVSLISLIWSLAILLLSKKYKQLPHMLTTNLLIAQSIVC-AGMMIWNFVKEKNFVGQILVFVLLYSSLYSTYLWTGLLAISLFLLKKRERVQIPVGIIIISG-WGIPALLVGVLLITGKHNGDSIDSAFFY 516

HSP 2 Score: 96.6709 bits (239), Expect = 2.213e-20
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 0 
Query:  613 SERSHITHHVVLLLIMSIVIALNISITVWSNLDKSLSNVQGLYLELRMASVVLTYGQGFFSFATFGFIKEFFMLGCFEKVYKQYLKLRGRKKITLEC-ESELDIDILLLRKRFIKHHLVQCSKDIVRCLSFRLRKFEGVFTGTCLIDWLLEEGLITDRADGIKYGNMLLRGRVIEHCLQEHYFYDLPYFYQFTGRAFE 809
            S    +T HV+L L++ I +  N+S  +W   ++       LY+EL+    V  +GQGF SF  FG  K   +L      +K+ L+     K T E  +S +  +I +  ++FI +H   C ++IV+      +   G F G  L+ WL+E GL +DR + + YG+ L++G VI+H   E+ F D   FY+F  ++ E
Sbjct:  650 SGDQQLTRHVLLCLLLIIGLFANLSSCLWWLFNQEPGR---LYVELQFFCAVFNFGQGFISFGIFGLDKHLIILP-----FKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGTFCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPE 839
The following BLAST results are available for this feature:
BLAST of TCONS_00056852-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GP1554.975e-7532.53Integral membrane protein GPR155 OS=Homo sapiens G... [more]
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