TCONS_00056757-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056757-protein
Unique NameTCONS_00056757-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056757-protein ID=TCONS_00056757-protein|Name=TCONS_00056757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MSINPLANPKGVKLNCELCSKPALLFCTKCRVTYYCDTEHQNIDWIGIHE
KICELLIPLKSPITSTCNSEEEREQLKKLKVKRQKDLVYLTRTAGQKLLF
EGKYEYAIPAAMQSLKISIEIYGLNSIELVLSYLILGEACIGLRRLTQAE
EYLSQAKWTVTKTPDCTPDILSKLHRNLGLLHATKQEYKEALRNLSEDIF
YASTFFGTHNIRTSGGYFHMANVFYAQNKLEVAFSLYQQITTIWFDHLSL
LVAQRTRQPPPPVGIGPAQYEVERKDFDNLDEAEAAEALLVLNSILEMRS
KQTSPSPLIMMELLMALSMLYFVQENYYEAMEYSKDATTFSKKISNLEES
KRKSLEDLYKAIETRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035753XLOC_035753Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056757TCONS_00056757Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 267..362
e-value: 0.0014
score: 18.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 63..144
e-value: 6.4E-4
score: 19.1
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 186..250
e-value: 0.0013
score: 18.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 145..185
e-value: 0.014
score: 15.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 94..251
coord: 286..340
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 16..53
e-value: 1.0E-8
score: 35.0
IPR002893Zinc finger, MYND-typePROSITEPS01360ZF_MYND_1coord: 16..53
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 16..53
score: 10.09
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 12..57

Blast
[Close]
BLAST of TCONS_00056757-protein vs. Swiss-Prot (Human)
Match: ZMY12 (Zinc finger MYND domain-containing protein 12 OS=Homo sapiens GN=ZMYND12 PE=1 SV=3)

HSP 1 Score: 303.523 bits (776), Expect = 2.965e-101
Identity = 167/369 (45.26%), Postives = 239/369 (64.77%), Query Frame = 0 
Query:    3 INPLANPKGVKLNCELCSKPALLFCTKCRVTYYCDTEHQNIDWIGIHEKICELLIPLKSPITSTCNSEEEREQ-LKKLKVKRQKDLVYLTRTAGQKLLFEGKYEYAIPAAMQSLKISIEIYGLNSIELVLSYLILGEACIGLRRLTQAEEYLSQAKWTVTKTPDCTPDILSKLHRNLGLLHATKQEYKEALRNLSEDIFYASTFFGTHNIRTSGGYFHMANVFYAQNKLEVAFSLYQQITTIWFDHLS---LLVAQRTRQPPPPVGIGPAQYEVERKDFDN---LDEAEAAEALLVLNSILEMRSKQTSPSPLIMMELLMALSMLYFVQENYYEAMEYSKDATTFSKKISNLEESKRKSLEDLYKAIET 364
            I PLA PKG +L CE+C  PA   C  C VTYYC   HQ  DW  IHEKIC+LLIPL++ +    NSEEER+  L++L+ +RQK L+    T  QK LFEGK+E A+PAA+QSL+  +++YGL+S+ELV +YL+L EA +GL R+ QAEEYL QA+WTV K+ DC+    S LHRNLGLL+  K+ Y+EA  +L+ DI++AS  FGT +IRTSGGYFH+AN+FY   KL++A +LY +++ IW  +L+    +++Q   Q    +G          K F+N   LDEA+ AEA+ +L SIL +R   +  +P   + +L  L M Y++  N  +A EY   A + +K+   L+  ++ ++++L   I T
Sbjct:    4 IYPLAVPKGRRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLLIPLRTSMPFY-NSEEERQHGLQQLQ-QRQKYLIEFCYTIAQKYLFEGKHEDAVPAALQSLRFRVKLYGLSSVELVPAYLLLAEASLGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGLLYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNHYQVLSQAHIQQMDLLG----------KLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKE-QQLDVHEQSTIQELLSLIST 359
The following BLAST results are available for this feature:
BLAST of TCONS_00056757-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZMY122.965e-10145.26Zinc finger MYND domain-containing protein 12 OS=H... [more]
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