TCONS_00054155-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054155-protein
Unique Name	TCONS_00054155-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	671

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054155-protein ID=TCONS_00054155-protein|Name=TCONS_00054155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp
TDQISKNIMDEKNTIYYDSDDGIQLFDSDHGENFIDEKEEDWGLEFDNEE
ENKIDVKEKKVKQDDEVNQETGASSSKETNTDVIIQRMSLNDGKAGMQGL
DKEKINKIIHEASKGSKFYENEKRKDERVQERVCEMKRDLSKFTETDKKK
AIVESDKLLKELDDEFDFTRTICHVDMDAFYAAVEMRDDPKLKDVPMAVG
GNDMLSTSNYLARKFGVRAAMPGFIAKKLCPNLVIVSSHFDKYRAVSAEI
REIFKEYDPNFSPMSLDEAYLDLTEYLVSNCEELTLKVDENDTRCLAEIV
VEEIRTRIHDKTQLTASAGIAPNLMLSKIXQLTASAGIAPNLMLSKICSD
FNKPNGQYYLQPNKEMVVNFIQDLPIRKVFGIGRVTEQMLQALGVTLVKD
LLAQRDILYLLFSTTTFAYFMRVALGISGNRIMHDDRKSMSVERTFHNQQ
NKDQLLKICNSLCQELANDLKKESLQIRNITLKYKLSSFVTKTRSKSIPY
SICKAEELFRFSKEILLHEIQEFQKEGKKFELRLMGVRGAHFYDKKQSSS
LKQNVVEDFFTAKYSEISPVKLGGACAGPSTKADDKLVPCPVCGALQSNA
NLDALNSHIDACLTKQTIKEIVKEQDLIEAKTQKSSPAKSTVSSGKRKSN
EQLKKKESKKSKNTLHSFWNK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034172	XLOC_034172	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054155	TCONS_00054155	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006642	Znf_Rad18_put
IPR017961	DNA_pol_Y-fam_little_finger
IPR017061	DNA_pol_eta/kappa/iota/IV
IPR001126	UmuC
IPR024728	PolY_HhH_motif
IPR022880	DNApol_IV

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003684	damaged DNA binding
GO:0003887	DNA-directed DNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006642	Zinc finger, Rad18-type putative	SMART	SM00734	c2hc_5	coord: 587..613 e-value: 1.1E-4 score: 31.6
IPR017961	DNA polymerase, Y-family, little finger domain	GENE3D	3.30.1490.100		coord: 449..552 e-value: 5.0E-18 score: 65.1
IPR017961	DNA polymerase, Y-family, little finger domain	PFAM	PF11799	IMS_C	coord: 435..549 e-value: 1.5E-11 score: 44.9
IPR017961	DNA polymerase, Y-family, little finger domain	SUPERFAMILY	100879	Lesion bypass DNA polymerase (Y-family), little finger domain	coord: 436..538
IPR017061	DNA polymerase eta/kappa/iota/IV	PIRSF	PIRSF036603	DNA_pol_eta	coord: 165..289 e-value: 1.6E-19 score: 67.8 coord: 431..671 e-value: 9.1 score: 2.6 coord: 279..331 e-value: 7.1E-5 score: 19.4 coord: 329..505 e-value: 1.2E-7 score: 28.6 coord: 23..169 e-value: 610.0 score: -3.5
None	No IPR available	GENE3D	3.30.70.270		coord: 331..369 e-value: 2.0E-12 score: 46.9 coord: 205..289 e-value: 3.6E-30 score: 104.9 coord: 290..330 e-value: 2.1E-9 score: 37.0
None	No IPR available	GENE3D	1.10.150.20		coord: 370..448 e-value: 5.4E-11 score: 42.3
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 146..329
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 331..430
IPR001126	UmuC domain	PFAM	PF00817	IMS	coord: 175..329 e-value: 4.2E-44 score: 150.1
IPR001126	UmuC domain	PROSITE	PS50173	UMUC	coord: 172..383 score: 54.246
IPR024728	DNA polymerase type-Y, HhH motif	PFAM	PF11798	IMS_HHH	coord: 366..395 e-value: 7.3E-6 score: 25.9
IPR022880	DNA polymerase IV	HAMAP	MF_01113	DNApol_IV	coord: 169..553 score: 29.04
IPR022880	DNA polymerase IV	CDD	cd03586	PolY_Pol_IV_kappa	coord: 174..538 e-value: 5.24965E-132 score: 393.81

Blast

[Close]

BLAST of TCONS_00054155-protein vs. Swiss-Prot (Human)
Match: POLK (DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 2.354e-142
Identity = 237/521 (45.49%), Postives = 333/521 (63.92%), Query Frame = 0

Query:   82 DVIIQRMSLNDGKAGMQGLDKEKINKIIHEASKGSKFYENEKRKDERVQERVCEMKRDLSKFTETDKKKAIVESDKLLKELDDEFDFTRTICHVDMDAFYAAVEMRDDPKLKDVPMAVGGNDMLSTSNYLARKFGVRAAMPGFIAKKLCPNLVIVSSHFDKYRAVSAEIREIFKEYDPNFSPMSLDEAYLDLTEYL--VSNCEE----LTLKVD---ENDT------------RCLAEIVVEEIRTRIH---DKTQLTASAGIAPNLMLSKI--------------------XQLTASAGIAPNLMLSKICSDFNKPNGQYYLQPNKEMVVNFIQDLPIRKVFGIGRVTEQMLQALGVTLVKDLLAQRDILYLLFSTTTFAYFMRVALGISGNRIMHD-DRKSMSVERTFHNQQNKDQLLKICNSLCQELANDLKKESLQIRNITLKYKLSSFVTKTRSKSIPYSICKAEELFRFSKEILLHEI-QEFQKEGKKFELRLMGVRGAHFYDKKQSSSLKQNVV 556
            D ++ RM LND KAGM+GLDKEKINKII EA+KGS+FY NE +K+++V +R+  M +  ++ T    +KA ++ D+   EL+   + + TI H+DMDAFYAAVEMRD+P+LKD P+AVG   MLSTSNY AR+FGVRAAMPGFIAK+LCP L+IV  +FDKYRAVS E++EI  +YDPNF  MSLDEAYL++T++L    N  E      +K+    END             R ++ ++ EE  + +    D  Q+       P ++ + +                      LTASAGIAPN ML+K+CSD NKPNGQY + PN++ V++FI+DLPIRKV GIG+VTE+ML+ALG+    +L  QR +L LLFS T++ YF+ ++LG+    +  D +RKSMSVERTF      ++   +C  LC ELA DL+KE L+ R +T+K K  +F  KTR+ ++   +  AEE+F  +KE+L  EI  +F        LRLMGVR + F +++     +++++
Sbjct:   13 DDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADF---PHPLRLRLMGVRISSFPNEEDRKHQQRSII 530

The following BLAST results are available for this feature:

BLAST of TCONS_00054155-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054155-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
POLK	2.354e-142	45.49	DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 ...	[more]

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TCONS_00054155-protein (polypeptide) - C. hemisphaerica