TCONS_00053506-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053506-protein
Unique NameTCONS_00053506-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053506-protein ID=TCONS_00053506-protein|Name=TCONS_00053506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MRLTDNVIRAFKPAKIFRDNTDRINHIDYTSNGETLITSSDDDSVTLYDC
FDGKQKKTSNSKKYGVSLIQFTHASNTVIHTSTKVDDTIRYLSLHDNKYL
RYFSGHTKTVVSLHMSPVDDSFISGSLDRTIRLWDLRSNNCQGLMHVSSR
PVTSFDPEGLIFAAGVDAEIIRLYDLRTFDKGPFATFNLPQADNGVELSG
IKFSNDGKKILVSTTSGLVYLLDAFQGNLLHTFMGLSTPGSGAVFLEVSF
SPDSQYVLSGSSNGKIYVWSSDSGKRITVLDGMHPGSTQCVAFNPKYMMF
ASSCSNLAFWIPDLNEVDK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033778XLOC_033778Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053506TCONS_00053506Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 257..271
score: 25.76
coord: 36..50
score: 27.93
coord: 122..136
score: 43.36
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 10..49
e-value: 0.0013
score: 28.0
coord: 138..175
e-value: 42.0
score: 6.7
coord: 180..223
e-value: 38.0
score: 7.0
coord: 273..311
e-value: 31.0
score: 7.6
coord: 226..270
e-value: 6.1E-4
score: 29.1
coord: 96..135
e-value: 2.3E-7
score: 40.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 99..135
e-value: 1.2E-5
score: 25.8
coord: 243..270
e-value: 5.4E-4
score: 20.6
coord: 13..49
e-value: 0.15
score: 12.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 238..279
score: 11.511
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 17..58
score: 9.472
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 103..144
score: 15.354
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 3..209
e-value: 3.7E-34
score: 117.5
NoneNo IPR availableGENE3D2.140.10.30coord: 210..316
e-value: 1.3E-19
score: 69.9
NoneNo IPR availableCDDcd00200WD40coord: 21..302
e-value: 3.9699E-42
score: 147.867
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 17..319
score: 26.841
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 10..310

Blast
[Close]
BLAST of TCONS_00053506-protein vs. Swiss-Prot (Human)
Match: WDR82 (WD repeat-containing protein 82 OS=Homo sapiens GN=WDR82 PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 3.224e-155
Identity = 199/316 (62.97%), Postives = 263/316 (83.23%), Query Frame = 0 
Query:    1 MRLTDNVIRAFKPAKIFRDNTDRINHIDYTSNGETLITSSDDDSVTLYDCFDGKQKKTSNSKKYGVSLIQFTHASNTVIHTSTKVDDTIRYLSLHDNKYLRYFSGHTKTVVSLHMSPVDDSFISGSLDRTIRLWDLRSNNCQGLMHVSSRPVTSFDPEGLIFAAGVDAEIIRLYDLRTFDKGPFATFNLPQADNGVELSGIKFSNDGKKILVSTTSGLVYLLDAFQGNLLHTFMGLSTPGSGAVFLEVSFSPDSQYVLSGSSNGKIYVWSSDSGKRITVLDGMHPGSTQCVAFNPKYMMFASSCSNLAFWIPDLNE 316
            M+LTD+V+R+F+ AK+FR+N+D+IN  D++ NGET+I+SSDDDS+ LYDC +GK K+T  SKKYGV LI++THA+NTV+++S K+DDTIRYLSLHDNKY+RYF GH+K VV+L MSPVDD+FISGSLD+TIRLWDLRS NCQGLMH+  +PV SFDPEGLIFAAGV++E+++LYDLR+FDKGPFATF + Q D   E +G+KFSNDGK IL+ST    + L+DAF+G ++HTF G +   S AV LE SF+PDSQ+++ GS +GKI+VW+ +SG ++ VLDG H G   C+ FNPK+M FAS+CSN+AFW+P +++
Sbjct:    1 MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKM-QYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYAN--SKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD 313
The following BLAST results are available for this feature:
BLAST of TCONS_00053506-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR823.224e-15562.97WD repeat-containing protein 82 OS=Homo sapiens GN... [more]
back to top