TCONS_00052783-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052783-protein
Unique NameTCONS_00052783-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052783-protein ID=TCONS_00052783-protein|Name=TCONS_00052783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI
ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIR
NWIRNIEEHAAADVEKMILGNKCDMNDKRQVSTVRGQDLAVEYNVKFMET
SAKTSTNVEEAFTALARDIKKKMDKKLENPNAGAGDTKIKVTADKVNKPK
KGCC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033362XLOC_033362Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052783TCONS_00052783Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 32..48
score: 34.18
coord: 112..125
score: 38.24
coord: 9..30
score: 50.99
coord: 50..72
score: 57.63
coord: 147..169
score: 49.39
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 9..172
e-value: 9.7E-109
score: 377.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 11..172
e-value: 7.8E-14
score: 56.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 6..172
e-value: 3.4E-34
score: 129.6
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..173
e-value: 9.9E-5
score: 19.1
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 14..203
e-value: 3.2E-5
score: 24.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 8..72
e-value: 1.6E-30
score: 104.4
NoneNo IPR availableGENE3D3.40.50.300coord: 73..170
e-value: 6.9E-41
score: 137.9
NoneNo IPR availablePROSITEPS51419RABcoord: 4..204
score: 38.057
NoneNo IPR availableCDDcd01867Rab8_Rab10_Rab13_likecoord: 6..172
e-value: 2.36717E-119
score: 337.703
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..163
e-value: 1.8E-31
score: 107.1
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 10..170
e-value: 7.4E-67
score: 223.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..181

Blast
[Close]
BLAST of TCONS_00052783-protein vs. Swiss-Prot (Human)
Match: RAB8A (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 1.283e-119
Identity = 163/195 (83.59%), Postives = 176/195 (90.26%), Query Frame = 0 
Query:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAAADVEKMILGNKCDMNDKRQVSTVRGQDLAVEYNVKFMETSAKTSTNVEEAFTALARDIKKKMDKKLENPNAGAGDTKIKVTADK 195
            MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK+IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA+ADVEKMILGNKCD+NDKRQVS  RG+ LA++Y +KFMETSAK + NVE AF  LARDIK KMDKKLE  +    +  +K+T D+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQ 195
The following BLAST results are available for this feature:
BLAST of TCONS_00052783-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB8A1.283e-11983.59Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
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