TCONS_00051582-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051582-protein
Unique NameTCONS_00051582-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051582-protein ID=TCONS_00051582-protein|Name=TCONS_00051582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MRNLSCLCRNIRRSGTLFKPTARCHTLRPRQLFTWSASIQHHIDNMNHEY
KNITEKLMMPDELSKSEMKKFSSEMNQLRPIMEAYHHLLKKKEELLEVAA
LAIDDMEFEKLAEDEMKELRQQIQQRESELIEMVIPSDLDDENNAVLEVR
AGTGGREAAIFALEIFNMYKKFSSSNRWSFDIVSESVNAEGGLKEASATI
NGNSVFAFMKHEIGVHRVQRIPVTESQGRVHTSTISVAVLPQPENVGFVL
DMKDVKIDTFKSSGAGGQHVNTTDSAVRVTHLPTGMTVSMQDGRSQIMNR
QKALQVLSAKLYDEERTRAMKERSDARRIQIGSALRSERIRTYNYPQDRI
TDHRIGLTLHGVEDLLNGGSNLHELIDSLKAHEKLLSLENLSNLKPVVRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032668XLOC_032668Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051582TCONS_00051582Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005139PCRF
IPR000352Pep_chain_release_fac_I_II
Vocabulary: Molecular Function
TermDefinition
GO:0016149translation release factor activity, codon specific
GO:0003747translation release factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006415 translational termination
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0016149 translation release factor activity, codon specific
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129
NoneNo IPR availableGENE3D3.30.160.20coord: 252..324
e-value: 4.9E-27
score: 92.9
NoneNo IPR availableGENE3D1.20.58.410coord: 32..131
e-value: 3.5E-7
score: 29.9
NoneNo IPR availableSUPERFAMILY75620Release factorcoord: 51..382
IPR005139Peptide chain release factorSMARTSM00937PCRF_a_2coord: 97..212
e-value: 3.4E-35
score: 132.9
IPR005139Peptide chain release factorPFAMPF03462PCRFcoord: 47..237
e-value: 2.2E-57
score: 193.9
IPR000352Peptide chain release factor class I/class IIPFAMPF00472RF-1coord: 248..354
e-value: 2.2E-35
score: 121.0

Blast
[Close]
BLAST of TCONS_00051582-protein vs. Swiss-Prot (Human)
Match: RF1ML (Peptide chain release factor 1-like, mitochondrial OS=Homo sapiens GN=MTRF1L PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 3.325e-99
Identity = 154/312 (49.36%), Postives = 215/312 (68.91%), Query Frame = 0 
Query:   79 RPIMEAYHHLLKKKE-ELLEVAALAIDDME-FEKLAEDEMKELRQQIQQRESELIEMVIPSDLDDENNAVLEVRAGTGGREAAIFALEIFNMYKKFSSSNRWSFDIVSESVNAEGGLKEASATINGNSVFAFMKHEIGVHRVQRIPVTESQGRVHTSTISVAVLPQPENVGFVLDMKDVKIDTFKSSGAGGQHVNTTDSAVRVTHLPTGMTVSMQDGRSQIMNRQKALQVLSAKLYDEERTRAMKERSDARRIQIGSALRSERIRTYNYPQDRITDHRIGLTLHGVEDLLNGGSNLHELIDSLKAHEKLLSL 388
            RP + A   LL +KE EL E   L  D+ E   KLAE+E+   +++I Q + ++I +++PS+  DEN+ +LEV AG GG+EA +F  EIF+MY+++++  RW F+ +    +  GGL+ ASA+I G+  +  MK E GVHRVQR+P TE QGRVHTST++VA+LPQP  +  V++ KD++IDT ++SGAGGQHVNTTDSAVR+ HLPTG+    Q  RSQ+ N++ A+  L AKLY       + +R +AR+IQIGS  RSE+IRTYN+PQ+R+TDHRI  TLH +E  + G   L EL+ SLK +    SL
Sbjct:   61 RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVPSEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEYADYESL 372
The following BLAST results are available for this feature:
BLAST of TCONS_00051582-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RF1ML3.325e-9949.36Peptide chain release factor 1-like, mitochondrial... [more]
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