TCONS_00051237-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051237-protein
Unique NameTCONS_00051237-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051237-protein ID=TCONS_00051237-protein|Name=TCONS_00051237-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MLDRQNKKENLVGITTHCGKETFIHLIKLKKMDIIKKFKIRHKRRSTPAT
MYDLIDHCHEYESGMRFHDQGGENDYQDGFWKVFMLNEKPGKATRCCERS
SSFNTHGYQDSKMADVATAEPCSASCYCMKHSKTARRRRFKSQSGYYLAI
MPNGQIMGIKDKNSPYIDIDVIPVGADLVKVWGVESELFLMIDDQGQMRG
TDVDSAECIFEETLTENFFNVYYSAMYLNKRWCIGLRNKQQTRSFYRKPK
PAKDTSFMIEIVQRRASTSSACDSDDSRVSSI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032476XLOC_032476Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051237TCONS_00051237Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002209Fibroblast_GF_fam
IPR008996IL1/FGF
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00262IL1HBGFcoord: 207..227
score: 33.26
coord: 176..203
score: 19.89
NoneNo IPR availableGENE3D2.80.10.50coord: 127..274
e-value: 2.2E-28
score: 98.2
IPR002209Fibroblast growth factor familySMARTSM00442FGF_2coord: 134..261
e-value: 4.3E-14
score: 62.8
IPR002209Fibroblast growth factor familyPFAMPF00167FGFcoord: 136..258
e-value: 1.3E-21
score: 76.9
IPR008996Cytokine IL1/FGFSUPERFAMILY50353Cytokinecoord: 122..259

Blast
[Close]
BLAST of TCONS_00051237-protein vs. Swiss-Prot (Human)
Match: FGF12 (Fibroblast growth factor 12 OS=Homo sapiens GN=FGF12 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.423e-20
Identity = 46/151 (30.46%), Postives = 81/151 (53.64%), Query Frame = 0 
Query:  127 YCMKHSKTARRR----------RFKSQSGYYLAIMPNGQIMGIKDKNSPYIDIDVIPVGADLVKVWGVESELFLMIDDQGQMRGTDVDSAECIFEETLTENFFNVYYSAMYL----NKRWCIGLRNKQQTRSFYRKPKPAKDTSFMIEIVQ 263
            +C    +  RRR          R  SQ GY+L + P+G I G KD+NS Y   ++IPVG  +V + GV++ L++ ++ +G +  +DV + EC F+E++ EN++ +Y S +Y      + W +GL  + Q     R  K    + F+ + ++
Sbjct:   54 FCSGRKRPVRRRPEPQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIE 204
The following BLAST results are available for this feature:
BLAST of TCONS_00051237-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGF122.423e-2030.46Fibroblast growth factor 12 OS=Homo sapiens GN=FGF... [more]
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