TCONS_00050466-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050466-protein
Unique NameTCONS_00050466-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050466-protein ID=TCONS_00050466-protein|Name=TCONS_00050466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MAKLNSSLTAMDWLPQLSVGGALTTGNPANINQTQPMKATQRVPFGQFDV
TAKYDGTSERFGKSKPPYSYANLIAFAINSTAKNKMTLSEIYQWISESFP
YYNETSNGWKNSIRHNLSLNKCFIKLPRTKDDPGKGSYWAIDTSNIHTNS
EQDSYKQSTNQTKFKLKNDTRQLSPYGNNRGHSPGRTSPIVSPSSPQKLN
NSFESTSSSDYSNPNSVGSSLETPQIFVNNQSAAALATQVNSTKPSSQKT
DPSRQCALDNKVFAEHFNLDDLSASFRSLYKSVFSQQSSSSSISSSAGMN
SISSVSSQNSTPKEKNIFSSQLQPTSSSGGANHLSHSGQLAPVSITEPSN
SMSEKEVLXQVVQITPIQIVSVHRLKHLKYLSTINLLQLLPLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031959XLOC_031959Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050466TCONS_00050466Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
IPR018122TF_fork_head_CS_1
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 109..126
score: 74.03
coord: 86..103
score: 53.53
coord: 65..78
score: 66.72
IPR001766Fork head domainSMARTSM00339forkneu4coord: 63..154
e-value: 2.1E-46
score: 170.2
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 65..145
e-value: 8.2E-37
score: 125.3
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 65..160
score: 33.54
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 50..152
e-value: 1.1E-36
score: 124.5
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 65..150
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 109..115
IPR018122Fork head domain conserved site1PROSITEPS00657FORK_HEAD_1coord: 65..78
NoneNo IPR availableCDDcd00059FHcoord: 65..142
e-value: 1.11771E-44
score: 149.626

Blast
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BLAST of TCONS_00050466-protein vs. Swiss-Prot (Human)
Match: FOXJ3 (Forkhead box protein J3 OS=Homo sapiens GN=FOXJ3 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.060e-54
Identity = 138/330 (41.82%), Postives = 179/330 (54.24%), Query Frame = 0 
Query:    2 AKLNSSLTAMDWLPQLSVGGALTTGNPA-NINQTQPMKATQRVP----FGQFDVTAKYDGTSERFGKSKPPYSYANLIAFAINSTAKNKMTLSEIYQWISESFPYYNETSNGWKNSIRHNLSLNKCFIKLPRTKDDPGKGSYWAIDTSNIHTNSEQDSYKQSTNQTKFKLKNDTRQLSPYGNNRGHSPGRTSPIVSPSSPQ----------KLNNSFESTSSSDYSNPNSVGSSLETPQIFVNNQSAAALATQVNSTKPS-SQKTDPSRQCAL-----DNKVFAEHFNLDDLSASFRSLYKSVFSQQSSSSSISSSAGMNSISSVSSQNS 310
            ++L SSLT+MDWLPQL++  A+   +   N + T   K    +       Q +V    DG        KPPYSYA+LI FAINS+ K KMTLSEIYQWI ++FPYY E  +GWKNSIRHNLSLNKCF+K+PR+KDDPGKGSYWAID     TN ++D       + K + ++  R  +PY  +   S G    I   +SP            L N+ +  S S  S+ N+  S      + +N+  +    T V S   S SQ   P +Q        D ++    +N +DLSASFRSLYKSVF Q     S+S    MN I S SSQ S
Sbjct:   18 SELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNTTLDQEEVQQHKDG--------KPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAID-----TNPKEDVLP---TRPKKRARSVERASTPYSIDSD-SLGMECIISGSASPTLAINTVTNKVTLYNTDQDGSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDKQLLFSEYNFEDLSASFRSLYKSVFEQ-----SLSQQGLMN-IPSESSQQS 324
The following BLAST results are available for this feature:
BLAST of TCONS_00050466-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXJ31.060e-5441.82Forkhead box protein J3 OS=Homo sapiens GN=FOXJ3 P... [more]
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