TCONS_00049511-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049511-protein
Unique NameTCONS_00049511-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049511-protein ID=TCONS_00049511-protein|Name=TCONS_00049511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
KSRIIIKMTQYLPANLLALFTARPPIPFKPPPDGLKKRKNETPIIGLTDF
LRNFETTAPPPPTKGERREQREERKRQEKKDYADSKLEEKVATWDPHSDT
NAVGDPFKTLFVGRIKYETSENKLRREMEAYGPVRNIAIVFNHNSRKPRG
YAFVEFEHERDMHSAYKHADGKKIDGRRIVVDVERGRTVKSWRPRRLGGG
LGGTRRGGPEDNIRHSGRVDQWEGKERERGGGEDRDRDRERDRSEKRERG
DRDRDREERRKRSRSPRDRKDRDRDRERRRDRDRGDRDKDRERSDRGDRD
KDRDRERSDRDRDRGDREKRDRGESRDRRRDRDERREEEYVGDAPPSGNG
EKNHYDNEFPYRSAEDGEIKQEEVEQNNYHVADQRAEEGDDDYYQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031406XLOC_031406Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049511TCONS_00049511Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR022023U1snRNP70_N
IPR034143snRNP70_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0030619U1 snRNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0030619 U1 snRNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 109..182
e-value: 1.2E-21
score: 87.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 110..179
e-value: 1.1E-17
score: 63.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 108..186
score: 17.643
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 93..214
NoneNo IPR availableGENE3D3.30.70.330coord: 64..204
e-value: 2.6E-29
score: 101.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..88
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 11..99
e-value: 4.0E-21
score: 75.4
IPR034143snRNP70, RNA recognition motifCDDcd12236RRM_snRNP70coord: 107..192
e-value: 1.07644E-49
score: 163.571

Blast
[Close]
BLAST of TCONS_00049511-protein vs. Swiss-Prot (Human)
Match: RU17 (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.051e-65
Identity = 135/215 (62.79%), Postives = 165/215 (76.74%), Query Frame = 0 
Query:    8 MTQYLPANLLALFTARPPIPFKPPPDGLKKRKNET-PIIGLTDFLRNFETT-APPPPTKGERREQREERKRQEKKDYADSKLEEKVATWDPHSDTNAVGDPFKTLFVGRIKYETSENKLRREMEAYGPVRNIAIVFNHNSRKPRGYAFVEFEHERDMHSAYKHADGKKIDGRRIVVDVERGRTVKSWRPRRLGGGLGGTRRGGPEDNIRHSGRVD 220
            MTQ+LP NLLALF  R PIP+ PP + L   K+   P  G+  ++R FE     PPPT+ E RE+R ERKR+EK +    ++E ++  WDPH+D NA GD FKTLFV R+ Y+T+E+KLRRE E YGP++ I +V++  S KPRGYAF+E+EHERDMHSAYKHADGKKIDGRR++VDVERGRTVK WRPRRLGGGLGGTRRGG + NIRHSGR D
Sbjct:    1 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDD 215
The following BLAST results are available for this feature:
BLAST of TCONS_00049511-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU171.051e-6562.79U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
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