TCONS_00049364-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049364-protein
Unique Name	TCONS_00049364-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	592

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049364-protein ID=TCONS_00049364-protein|Name=TCONS_00049364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp
MPLKMNFVGGTKLTSTGVEEKIEVKKEVTTTAAPTTTTAAAATSESTDQE
VPVEGTPIGESYVEDIKSDVGKVIGFKCTLCDCRFNDHVAKMAHIKGRRH
RMSYKKKVDRTIHVEMKGSKRKQAGVALTGGSGAPGTGEEGQNAFKQKQF
EQMQWERQLRMREEELSRWERDEYMRRANEDRYWTRPDKSRMHEMDFYEW
ERRENYMEHPGPMFHRQGPPPPTPDDKLIMAKHSDIYPSDSELKQVQSTV
AAVEKALKMVSDSLGDKDSTPGEIKPLIKAEDKEEKKEEGKEEKKVEPLM
KSAAAAAGNNRTLKGVMRVGPLCTGLLLKGQLAVELVVLCADKPTKTLLT
KVGKLVPDKLKEAAPEAKYNMSISVADCCINITSTDEPKCTVKVTLTSPA
CRDEDEQGQPKESTPVVNEKDVLDKKKTLETLAALRHAKWFQARANQLTS
CVITIRIVRDLCQRSAAFKPLSGWAIELLCEKAIGSSFGPIPPGEAFRRV
LEAVSSGVFLPGGTGLIDPCEKEKTDAAANLTAQEREDMTAAAQQALRSF
AFRQLHKVLGVEPLKPSGSRKRKAPSTSEGAAEPAKQVKVEA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031332	XLOC_031332	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049364	TCONS_00049364	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006561	DZF_dom
IPR022755	Znf_C2H2_jaz
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 152..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 562..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..55
IPR006561	DZF domain	SMART	SM00572	rich3	coord: 312..567 e-value: 1.2E-118 score: 410.1
IPR006561	DZF domain	PFAM	PF07528	DZF	coord: 318..564 e-value: 4.1E-68 score: 229.6
IPR006561	DZF domain	PROSITE	PS51703	DZF	coord: 216..592 score: 88.475
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 76..101 e-value: 4.8E-5 score: 23.4
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 78..100
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 55..107

Blast

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BLAST of TCONS_00049364-protein vs. Swiss-Prot (Human)
Match: ZFR (Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2)

HSP 1 Score: 390.578 bits (1002), Expect = 7.933e-124
Identity = 238/590 (40.34%), Postives = 334/590 (56.61%), Query Frame = 0

Query:    4 KMNFVGGTKLTSTG----------------VEEKIEVKKEVTTTAAPTTTTAAAATSESTDQEVPVEGTPIGESYVEDIKSDVGKVIGFKCTLCDCRFNDHVAKMAHIKGRRHRMSYKKKVDRTIHVEMKGSKRKQAGVALTGGSGAPGTGEEGQNAFKQKQFEQMQ------WERQLRMREEELSRWERDEYMRRANEDRY-WTRPDKSRMHEMDFYEWERRENY---MEHPGPMFHRQGPP---PPTPDDKLIMAKHSDIYPSDSELKQVQSTVAAVEKALKMVSDSLGDKDSTPGEIKPLIKAEDKEEKKEEGKEEKKVEPLMKSAAAAAGNNRTLKGVMRVGPLCTGLLLKGQLAVELVVLCADKPTKTLLTKVGKLVPDKLKEAAPEAKYNMSISVADCCINITSTDEPKCTVKVTLTSPACRDEDEQGQPKESTPVVNEKDVLDKKKTLETLAALRHAKWFQARANQLTSCVITIRIVRDLCQRSAAFKPLSGWAIELLCEKAIGSSFGPIPPGEAFRRVLEAVSSGVFLPGGTGLIDPCEKEKTDAAANLTAQEREDMTAAAQQALRSFAFRQLHKVLGVEPL 564
            K+NFVGG KL STG                V   +++ +    T +   T A+ A  +S  Q       P+G  YVE++++D GKVI F C LC+C FND  AK  H+KGRRHR+ YKKKV+  + VE+K S R                    +   ++K  +QMQ         +      E+ R+E D Y RR  E+++ W   D+ RM +  +            +    P   +   P   P + DD+ +M KH+ IYP++ EL+ VQ  V+  E+ALK+VSDSL               +E ++ K +EG ++K+            G +R LKGV+RVG L  GLLL+G   V LV+LC++KP+KTLL+++ + +P +L   +PE KY++  +V++  I + S  EPK  V +TLTSP  R+E+ +     S  V +  DVLD++K L+ LAALRHAKWFQARAN L SCVI IRI+RDLCQR   +     WA+ELL EKAI S+  P  PG+A RRV E +SSG+ L G  GL+DPCEK+  D  A +T Q+RED+T++AQ ALR  AFRQ+HKVLG++PL
Sbjct:  501 KINFVGGNKLQSTGNKAEDIKGTECVKSTPVTSAVQIPEVKQDTVSEPVTPASLAALQSDVQ-------PVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIR-------------------ARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWD--DRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSL---------------SEHEKNKNKEGDDKKE-----------GGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPE-KYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPL 1035

The following BLAST results are available for this feature:

BLAST of TCONS_00049364-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049364-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZFR	7.933e-124	40.34	Zinc finger RNA-binding protein OS=Homo sapiens GN...	[more]

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TCONS_00049364-protein (polypeptide) - C. hemisphaerica