TCONS_00049253-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049253-protein
Unique NameTCONS_00049253-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1864

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049253-protein ID=TCONS_00049253-protein|Name=TCONS_00049253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1864bp
MTMKGVVFVLLITWPQILIAHPCETLINFIPEEVSTLHITDCSSKDLTSI
PDDLPTNITALHLSYNLITSWDPESLRKYQNLQYINLDYNPIVELKDNAF
SNMSALEEIHIAGGRIVKINKNAFQHLPKLEVLNLEYNQLESIKEDDFEN
MKNLREILLTGNRLSLIDKNAFNETLHLEALFLDLNRLESLYDSTFYGLL
KLNTLHLASNKLTSVPSSISDLKLLTKLDLSYNSFTKYPLFKEMNQLLEL
DLMGCSIKEIESSNLKQTPNLRKLRLNRNNLKKIGIDQRLDNLRNLKELI
LLGNQIEEIDERTFGFNSDSIEVLNLGRNNLPSLKEKVFQPLKNLKELSL
TGNGKLLALPQKLLSQNSKLKTLYLSKIGLTALPTNVVKNLGELENLYIN
DNRIFALNDDVFSHLKSLKLLQLDNNQIEELTDKHFANNSQLTELFISDN
SRFKTIHKDAFKQNMQIKRLHLRKNNLGVLDEHVFQSLYSLTELNLRENK
NIKELKNNLFRYNDKLHILDLTDTSLEKISPITFERQTRLHSIRGKFQMD
CTYKSLNQMRDLRRKNILKDENFSCALLNNVKDSKALENAGIMEGYFNSH
RKELGYIDRSEVYISKNGSRGLNCGSIENPCQRIDDVLFDRKRPVTIYLE
AAIEVDQDFEERVINASSAVNTTSASERFNTTSTRPSLKLGADVSTNQIK
SNMHIVEYKLLLPLNILTSVTFKRYSKNKDLKGIRPIVTTKYKTLFVMRS
NGFFIIENVDFILPENGVLLDVDSEGDFLQKVVLRNTDISSGGYKNSVVA
VLLNIYQGLGDFVASNVNIQHGTLLRLKGNIFLKSSPRINNINGTFQAQN
VSAVHILQAVDIQNYQTICNINKIKIKYGKKIAYGLYFNNAICNIADLSI
KNVTIKNSAILVKTAKNSQIDDLRDLENIGRYMYNFPDTRSYATFPNNFK
FEKIKVTQSTMTNILEISNFPRALTVKDGFYIMINEFQNGIEITQSDFEA
TNMRLIHNDVRRNMLSQNKGSLSLTDVLVKKNKATGVTKAIAYQAEPNSG
TQFKLKNISVDWEQVNSTHPPLFDLFLSNGHFEIDNVNVTSYSSYDAVTA
SIEVEANTESKKVKSFINNFRTDCTHNLQARKDVDHSIRGRKLEMSCVAC
EIKMYTKQKSYLKVKTKIGGGSTKDDIRVKPDTHLEEDDNINFNILTKIV
RDSYSKEFQCKSCPVGGSCKNGIKSSGNFYGFTKIDGTVSFTACPRAYCC
TKQECVDINSCRQFRNGTLCGSCIKGYQEDFFSDRCVTITSCKNTTLFWV
FFIMVALVVCIFFLFLKDITLFLKSIPDRLKVCFGKELPASESTDFELNK
ENLDENEEDGVIENGFTDSKMKDSHKTDSDGVAIIERESIESSESEDERH
LTTSGAFNIVVGFYQIRSLLTVDVGTKYRRSNTYQAQLTQIMNLDFNFIR
SLCPLQELSAIGEGFIRNQLILVIMLGWAFLFLIIYFVLKVPGFLKRTKS
KKDTQIEFGSEEKQSGQDISLEEIRKTRQAKSETENSTAEIGIDAEKINQ
NREQNNLTVPQRIGLGMIKIILFGYKNASTFAIICFHCVDIKGSSVLFIN
GNQKCFQPFQYAQMVFVGLWCFPFPAALMFSYRLYMRYVISLRKLVLFIV
FPSLVPFYFTYLLSKGCFSKTVAKQGTQDTVATNEKRVTVLLKEMFEEAY
RKRKGKEYFVFWETWRLYQRLILAFVSTFAINPVNRICYATPIILFFIFV
YWYVKPYKKQYYILHWMEVIGLLGITFTLVNNMFRSFLYVFDIPDQEPIP
TSLSVLWGLDTIASPIFVLVFYYLVKPLFEKIISLIFSMEVCCSGGSSES
ETIEHGSIYKNENV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031268XLOC_031268Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049253TCONS_00049253Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 495..515
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 320..341
e-value: 51.0
score: 7.4
coord: 415..438
e-value: 0.77
score: 18.8
coord: 222..243
e-value: 55.0
score: 7.2
coord: 488..512
e-value: 33.0
score: 9.0
coord: 103..126
e-value: 190.0
score: 2.7
coord: 268..289
e-value: 380.0
score: 0.3
coord: 391..414
e-value: 1.9
score: 17.5
coord: 466..487
e-value: 410.0
score: 0.0
coord: 151..174
e-value: 5.5
score: 15.4
coord: 342..366
e-value: 86.0
score: 5.6
coord: 56..78
e-value: 180.0
score: 3.0
coord: 79..102
e-value: 28.0
score: 9.6
coord: 293..316
e-value: 0.97
score: 18.5
coord: 199..221
e-value: 10.0
score: 13.2
coord: 177..198
e-value: 210.0
score: 2.5
coord: 127..150
e-value: 0.0023
score: 27.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 419..853
e-value: 1.5E-23
score: 82.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 20..170
e-value: 3.9E-33
score: 113.7
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 171..301
e-value: 3.3E-26
score: 91.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 302..418
e-value: 1.7E-22
score: 79.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 293..541
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 34..308
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 393..450
e-value: 1.0E-10
score: 41.1
coord: 105..164
e-value: 1.4E-14
score: 53.5
coord: 177..234
e-value: 5.1E-11
score: 42.1
coord: 294..353
e-value: 7.3E-10
score: 38.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 270..291
score: 7.25
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 224..245
score: 6.033
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 81..102
score: 7.034
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 201..223
score: 7.104
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 295..314
score: 6.418
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 57..78
score: 6.719
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 441..463
score: 4.57
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 320..341
score: 6.411
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 490..512
score: 6.018
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 417..438
score: 7.034
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1437..1459
score: 6.126
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 246..267
score: 5.679
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 393..414
score: 5.856
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 515..536
score: 6.133
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 153..174
score: 5.733
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 129..150
score: 7.958
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 466..487
score: 4.901
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 177..198
score: 6.395
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 344..366
score: 4.778

Blast
[Close]
BLAST of TCONS_00049253-protein vs. Swiss-Prot (Human)
Match: GPV (Platelet glycoprotein V OS=Homo sapiens GN=GP5 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.393e-38
Identity = 114/360 (31.67%), Postives = 176/360 (48.89%), Query Frame = 0 
Query:   95 LKDNAFSNMSALEEIHIAGGRIVKINKNAFQHLPKLEVLNLEYNQLESIKEDDFENMKNLREILLTGNRLSLIDKNAFNETLHLEALFLDLNRLESLYDSTFYGLLKLNTLHLASNKLTSVPSSISDLKL-LTKLDLSYNSFTKYP--LFKEMNQLLELDLMGCSIKEIESSNLKQTPNLRKLRLNRNNLKKIGIDQRLDNLRNLKELILLGNQIEEIDERTFGFNSDSIEVLNLGRNNLPSLKEKVFQPLKNLKELSLTGNGKLLALPQKLLSQNSKLKTLYLSKIGLTALPTNVVKNLGELENLYINDNRIFALNDDVFSHLKSLKLLQLDNNQIEELTDKHFANNSQLTELFISDNS 451
            L+  +FS M+ L+ + I+   I  +    F  L KL+ L L  N++  +     + M  L ++ L  N L  ID+N F + ++L+ L L+ N+L+ L  S F  L  L  L L+ N LT +P  +   +  L +L L  N        L   +  L EL      I+ I      + PNL  L L+RN+L  +     L +  NL  L L  N + E+    FG     ++ L L R  L +L    F+ L  L+ L +T + +L ALPQ       +L+ L L   GLTALP  +++ LG+L  + +  NR+ AL   +F +L SL+ +QLD+NQ+E L    F    +LTE+ +  NS
Sbjct:   65 LQSQSFSGMTVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKMVLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNNLTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGALTELQFHRNHIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFLHS-HNLTLLTLFENPLAELPGVLFG-EMGGLQELWLNRTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGLLRGLGKLRQVSLRRNRLRALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGHNS 422

HSP 2 Score: 120.939 bits (302), Expect = 5.695e-28
Identity = 109/374 (29.14%), Postives = 163/374 (43.58%), Query Frame = 0 
Query:   56 TNITALHLSYNLITSWDPESLRKYQNLQYINLDYNPIVELKDNAFSNMSALEEIHIAGGRIVKINKNAFQHLPKLEVLNLEYNQLESIKEDDFENMKNLREILLTGNRLSLIDKNAFNETLHLEALFLDLNRLESLYDSTFYGLLKLNTLHLASNKLTSV-PSSISDLKLLTKLDLSYNSFTKYP--LFKEMNQLLELDLMGCSIKEIESSNLKQTPNLRKLRLNRNNLKKIGIDQRLDNLRNLKELILLGNQIEEIDERTFGFNSDSIEVLNLGRNNLPSLKEKVFQPLKNLKELSLTGNGKLLALPQKLLSQNSKLKTLYLSKIGLTALPTNVVKNLGELENLYINDNRIFALNDDVFSHLKSLKLLQLDNN 426
            T +  L +S + I++  P +      L+ + L  N I  L       M  LE++ +    +  I++N FQ L  L+ L L  NQL+ +    F N++NL+ + L+GN L+ + K        LE L L  NRL SL       L  L  L    N + S+ P +   L  L+ L LS N     P  LF   + L  L L    + E+      +   L++L LNR  L+ +         RNL  L  LG  +                        L +L +  FQ L  L+ L+L  NG L ALP  LL    KL+ + L +  L ALP  + +NL  LE++ ++ N++  L  DVF  L  L  + L +N
Sbjct:   74 TVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKMVLLEQLFLDHNALRGIDQNMFQKLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNNLTHLPKGLLGAQAKLERLLLHSNRLVSLDSGLLNSLGALTELQFHRNHIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLFENPLAELPGVLFGEMGGLQELWLNRTQLRTLPAAA----FRNLSRLRYLGVTLSP---------------------RLSALPQGAFQGLGELQVLALHSNG-LTALPDGLLRGLGKLRQVSLRRNRLRALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGHN 421

HSP 3 Score: 108.612 bits (270), Expect = 5.926e-24
Identity = 105/403 (26.05%), Postives = 182/403 (45.16%), Query Frame = 0 
Query:  153 NLREILLTGNRLSLIDKNAFNETLHLEALFLDLNRLESLYDSTFYGLLKLNTLHLASNKLTSVPSSISD-LKLLTKLDLSYNSFTKYPLFKEMNQLLELDLMGCSIKEIESSNLKQTPNLRKLRLNRNNLKKIGIDQRLDNLRNLKELILLGNQIEEIDERTFGFNSDSIEVLNLGRNNLPSLKEKVFQPLKNLKELSLTGNGKLLALPQKLLSQNSKLKTLYLSKIGLTALPTNVVKNLGELENLYINDNRIFALNDDVFSHLKSLKLLQLDNNQIEELTDKHFANNSQLTELFISDNSRFKTIHKDAFKQNMQIKRLHLRKNNLGVLDEHVFQSLYSLTELNLRENKNIKELKNNLFRYNDKLHILDLTDTSLEKISPITFERQTRLHSI---RGKFQMDC 551
            NL  ILL G    ++   +F+    L+ L +  + + ++   TF  L+KL TL L+ NK+T +P ++ D + LL +L L +N+                      ++ I+ +  ++  NL++L LN+N L  +       NL NLK L L GN +  + +   G  +  +E L L  N L SL   +   L  L EL    N  + ++      +   L +L LS+  L  LP+ +  +   L  L + +N +  L   +F  +  L+ L L+  Q+  L    F N S+L  L ++ + R   + + AF+   +++ L L  N L  L + + + L  L +++LR N+ ++ L   LFR    L  + L    LE +    F    RL  +      ++ DC
Sbjct:   51 NLTHILLFGMGRGVLQSQSFSGMTVLQRLMISDSHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKMVLLEQLFLDHNA----------------------LRGIDQNMFQKLVNLQELALNQNQLDFLPA-SLFTNLENLKLLDLSGNNLTHLPKGLLGAQA-KLERLLLHSNRLVSLDSGLLNSLGALTELQFHRN-HIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFLHSHNLTLLTLFENPLAELPGVLFGEMGGLQELWLNRTQLRTLPAAAFRNLSRLRYLGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGLLRGLGKLRQVSLRRNR-LRALPRALFRNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGHNSWRCDC 427
The following BLAST results are available for this feature:
BLAST of TCONS_00049253-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPV2.393e-3831.67Platelet glycoprotein V OS=Homo sapiens GN=GP5 PE=... [more]
back to top