TCONS_00048730-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048730-protein
Unique NameTCONS_00048730-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048730-protein ID=TCONS_00048730-protein|Name=TCONS_00048730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MTTVHLMNGHHHLLNGNMNAMNGHLAMNGYANHAQMEPPKPAELVEVEPF
DEDNATNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGYA
FVKYELPNDAKKAMESLQGMKLTNKTIKVSIARPSSNEIKNANLYVSGLP
LTCSEQELRVLFARYGAIITAKVLYEENGQSRGVGFVRFDKRIDAEAAIS
GLNNRIPEMNGAVKPLTVKFANPPSQKIQPYLDILAQAKGLAGSALLRQA
VGLSQLSPMAATSTAAAASLGTSPLASPLSPNSSILRGNLAISPSNSVTA
LNGIQTSSWCVFVYNLPSDANDLTLFQLFSKYGAILSTRVVYDDNTKKCK
GFGFVNMAHYEDATMSILHLNGYCLERGKPLQVSFKRPKSQQNMPVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030971XLOC_030971Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048730TCONS_00048730Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002343Hud_Sxl_RNA
IPR000504RRM_dom
IPR006548ELAD_HU_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002343Paraneoplastic encephalomyelitis antigenPRINTSPR00961HUDSXLRNAcoord: 56..71
score: 78.33
coord: 204..221
score: 37.96
coord: 129..146
score: 70.19
coord: 113..128
score: 48.96
coord: 147..162
score: 45.83
coord: 162..174
score: 50.26
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 143..219
e-value: 1.0E-16
score: 71.6
coord: 310..384
e-value: 1.1E-20
score: 84.8
coord: 57..130
e-value: 3.0E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 58..128
e-value: 9.2E-21
score: 73.4
coord: 311..376
e-value: 1.8E-17
score: 62.8
coord: 144..205
e-value: 3.4E-17
score: 61.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 142..223
score: 17.813
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 56..134
score: 18.257
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 309..388
score: 16.824
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 54..205
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 300..392
IPR006548Splicing factor ELAV/HuTIGRFAMTIGR01661TIGR01661coord: 54..390
e-value: 7.0E-108
score: 359.3
NoneNo IPR availableGENE3D3.30.70.330coord: 263..395
e-value: 3.2E-22
score: 78.4
NoneNo IPR availableGENE3D3.30.70.330coord: 30..137
e-value: 1.2E-26
score: 92.9
coord: 138..231
e-value: 1.2E-21
score: 76.6

Blast
[Close]
BLAST of TCONS_00048730-protein vs. Swiss-Prot (Human)
Match: ELAV2 (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 2.519e-102
Identity = 168/356 (47.19%), Postives = 223/356 (62.64%), Query Frame = 0 
Query:   52 EDNATNLIINYLPQEMTEEELRTLFSSVGPLESCKLIRDKVTRASLGYAFVKYELPNDAKKAMESLQGMKLTNKTIKVSIARPSSNEIKNANLYVSGLPLTCSEQELRVLFARYGAIITAKVLYEE-NGQSRGVGFVRFDKRIDAEAAISGLNNRIPEMNGAVKPLTVKFANPPSQKI-QPYLDIL-------------AQAKGLAGSALLRQAVGLSQLSPMAATSTAAAASLGTSPLASPLSPNSSILRGNLAISPSNSVTALNGIQTSSWCVFVYNLPSDANDLTLFQLFSKYGAILSTRVVYDDNTKKCKGFGFVNMAHYEDATMSILHLNGYCLERGKPLQVSFKRPKSQQ 392
            ED+ TNLI+NYLPQ MT+EEL++LF S+G +ESCKL+RDK+T  SLGY FV Y  P DA+KA+ +L G++L  KTIKVS ARPSS  I++ANLYVSGLP T +++EL  LF++YG IIT+++L ++  G SRGVGF+RFDKRI+AE AI GLN + P   GA +P+TVKFAN PSQK  Q  L  L              QA+      LL  A G+ + SPM      + A +                  N+   P            + WC+FVYNL  DA++  L+Q+F  +GA+ + +V+ D NT KCKGFGFV M +Y++A M+I  LNGY L   + LQVSFK  K+ +
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPP--GATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGI------------------NIPGHPG-----------TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG-DRVLQVSFKTNKTHK 358
The following BLAST results are available for this feature:
BLAST of TCONS_00048730-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELAV22.519e-10247.19ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
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